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MS020280 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020280
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold665:697704..697825
RNA-Seq ExpressionMS020280
SyntenyMS020280
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8401856.1 hypothetical protein HHK36_012803 [Tetracentron sinense]1.9e-0567.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        KNG ESHVF+QT + DFYSN+ R +E R+VFDEM ERD F
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
XP_008447444.1 PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Cucumis melo]1.9e-0567.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        K G ESH+F+QT L DFYS +++  E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
XP_011651448.1 pentatricopeptide repeat-containing protein At1g06143 [Cucumis sativus]7.2e-0567.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        K G ESH+F+QT L DFYS ++   E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
XP_022134008.1 pentatricopeptide repeat-containing protein At1g06143 [Momordica charantia]3.5e-0775Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        KNG ESHVF+QT L DFYSN+ +  E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
XP_038888390.1 pentatricopeptide repeat-containing protein At1g06143 [Benincasa hispida]5.5e-0567.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        K+G ESH+F+QT L DFYSN++R  E RKVFDEM ERD+F
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
TrEMBL top hitse value%identityAlignment
A0A0A0LB99 Uncharacterized protein3.5e-0567.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        K G ESH+F+QT L DFYS ++   E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
A0A1S3BHH1 pentatricopeptide repeat-containing protein At1g06145-like9.2e-0667.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        K G ESH+F+QT L DFYS +++  E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
A0A2G5CYX1 Uncharacterized protein4.6e-0567.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        KNG ESHVF+QT L DFYSN  + +E  KVFDEM ERD F
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
A0A5A7T9J0 Pentatricopeptide repeat-containing protein9.2e-0667.5Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        K G ESH+F+QT L DFYS +++  E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
A0A6J1BWV2 pentatricopeptide repeat-containing protein At1g061431.7e-0775Show/hide
Query:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
        KNG ESHVF+QT L DFYSN+ +  E RKVFDEMCERDAF
Subjt:  KNGPESHVFIQTVLFDFYSNVKRFLE-RKVFDEMCERDAF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein6.5e-0468.75Show/hide
Query:  HVFIQTVLFDFYSNVKRFLE-RKVFDEMCERD
        HV IQT L DFYS   R  E RKVFDEM ERD
Subjt:  HVFIQTVLFDFYSNVKRFLE-RKVFDEMCERD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAATGGACCTGAATCGCATGTATTTATTCAAACTGTTTTGTTTGATTTTTACTCAAATGTGAAGAGATTTTTGGAGAGAAAGGTGTTCGATGAAATGTGTGAAAGAGA
TGCTTTC
mRNA sequenceShow/hide mRNA sequence
AAGAATGGACCTGAATCGCATGTATTTATTCAAACTGTTTTGTTTGATTTTTACTCAAATGTGAAGAGATTTTTGGAGAGAAAGGTGTTCGATGAAATGTGTGAAAGAGA
TGCTTTC
Protein sequenceShow/hide protein sequence
KNGPESHVFIQTVLFDFYSNVKRFLERKVFDEMCERDAF