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MS020286 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020286
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger protein 3-like
Genome locationscaffold665:751308..751778
RNA-Seq ExpressionMS020286
SyntenyMS020286
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571507.1 Zinc finger protein 11, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3051.61Show/hide
Query:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNF-----YSPHPTFFSSTSSS----GPQTHQ
        + +W  V +      +QF WPAKNY+CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSW+ +NS PNPN       + + +  S+T       G  +  
Subjt:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNF-----YSPHPTFFSSTSSS----GPQTHQ

Query:  DHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        +++  F++Q  HD+   + V+KKK KK+LVNLELKMG    + SNED LDLEL L
Subjt:  DHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

XP_022145912.1 zinc finger protein 3-like [Momordica charantia]2.7e-8798.73Show/hide
Query:  MDGALLSSGKVKEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQT
        MDGALLSSGKVKEKWDCV+EQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQT
Subjt:  MDGALLSSGKVKEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQT

Query:  HQDHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        HQDHRLCFTNQKHHD+DQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
Subjt:  HQDHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

XP_022963791.1 zinc finger protein 11-like [Cucurbita moschata]6.9e-3051.61Show/hide
Query:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNF-----YSPHPTFFSSTSSS----GPQTHQ
        + +W  V +      +QF WPAKNY+CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSW+ +NS PNPN       + + +  S+T       G  +  
Subjt:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNF-----YSPHPTFFSSTSSS----GPQTHQ

Query:  DHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        +++  F++Q  HD+   + V+KKK KK+LVNLELKMG    + SNED LDLEL L
Subjt:  DHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

XP_023511420.1 zinc finger protein 11-like [Cucurbita pepo subsp. pepo]1.4e-3051.9Show/hide
Query:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSS------------GPQ
        + +W  V +      +QF WPAKNY+CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSW+ +NS PNPN      TF  +T++S            G  
Subjt:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSS------------GPQ

Query:  THQDHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        +  +++  F++Q  HD+   + V+KKK KK+LVNLELKMG    + SNED LDLEL L
Subjt:  THQDHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

XP_038888773.1 LOW QUALITY PROTEIN: zinc finger protein 11-like [Benincasa hispida]2.4e-3051.65Show/hide
Query:  LSSGKVK---EKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN------SCPNPNFYSPHP---------
        + +GK K   ++W  VKE+T    +QF WPAKNY CNFC+REFKSAQALGGHMNVHRRDR R+RLLPSWVP+N      S PNPN  +P+P         
Subjt:  LSSGKVK---EKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN------SCPNPNFYSPHP---------

Query:  -TFFSSTSSSGPQTHQDH-----RLCFTNQKH------HDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
         TF SS  +S     QD        C  N  +      HD+D +V  V KK KK LVNLELKMG      SNED LDLEL L
Subjt:  -TFFSSTSSSGPQTHQDH-----RLCFTNQKH------HDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

TrEMBL top hitse value%identityAlignment
A0A0A0L7I0 C2H2-type domain-containing protein5.3e-2849.71Show/hide
Query:  KEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN-------SCPNPNFYSPHPTFFSSTSSSG---------PQTHQ
        KE T    ++F WPAKNY CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSWV +N       SCPNPNF +  P+ F+  SSS           Q  +
Subjt:  KEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN-------SCPNPNFYSPHPTFFSSTSSSG---------PQTHQ

Query:  DHRLCFTN---------------QKHHDED-QEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        +   C  N               Q+H D+D  +V  V KK KK +VNLELKMG      SN + LDLEL L
Subjt:  DHRLCFTN---------------QKHHDED-QEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

A0A1S3C0E4 transcriptional regulator SUPERMAN-like3.7e-2951.74Show/hide
Query:  VKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN-------SCPNPNFYSPHPTFFSSTSSSG---------PQTH
        VKE T    ++F WPAKNY CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSWV +N       SCPNPNF +  P+ F+  SSS           Q  
Subjt:  VKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN-------SCPNPNFYSPHPTFFSSTSSSG---------PQTH

Query:  QDHRLCFTN--------------QKH--HDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        ++   C  N              Q+H   D DQ + V KKK KKSLVNLELKMG      SN + LDLEL L
Subjt:  QDHRLCFTN--------------QKH--HDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

A0A5D3B8Q5 Transcriptional regulator SUPERMAN-like3.7e-2951.74Show/hide
Query:  VKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN-------SCPNPNFYSPHPTFFSSTSSSG---------PQTH
        VKE T    ++F WPAKNY CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSWV +N       SCPNPNF +  P+ F+  SSS           Q  
Subjt:  VKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPEN-------SCPNPNFYSPHPTFFSSTSSSG---------PQTH

Query:  QDHRLCFTN--------------QKH--HDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        ++   C  N              Q+H   D DQ + V KKK KKSLVNLELKMG      SN + LDLEL L
Subjt:  QDHRLCFTN--------------QKH--HDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

A0A6J1CY18 zinc finger protein 3-like1.3e-8798.73Show/hide
Query:  MDGALLSSGKVKEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQT
        MDGALLSSGKVKEKWDCV+EQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQT
Subjt:  MDGALLSSGKVKEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQT

Query:  HQDHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        HQDHRLCFTNQKHHD+DQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
Subjt:  HQDHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

A0A6J1HH25 zinc finger protein 11-like3.3e-3051.61Show/hide
Query:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNF-----YSPHPTFFSSTSSS----GPQTHQ
        + +W  V +      +QF WPAKNY+CNFC+REFKSAQALGGHMNVHRRDRAR+RLLPSW+ +NS PNPN       + + +  S+T       G  +  
Subjt:  KEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNF-----YSPHPTFFSSTSSS----GPQTHQ

Query:  DHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL
        +++  F++Q  HD+   + V+KKK KK+LVNLELKMG    + SNED LDLEL L
Subjt:  DHRLCFTNQKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 103.0e-1283.33Show/hide
Query:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR
        WP ++Y C+FCRREFKSAQALGGHMNVHRRDRARL+
Subjt:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR

Q38895 Transcriptional regulator SUPERMAN7.6e-1656.16Show/hide
Query:  FPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQTH
        F WP ++Y C+FC+REF+SAQALGGHMNVHRRDRARLRL  S    +S P+P +  P+P +  ST ++ P  H
Subjt:  FPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQTH

Q9LHS9 Probable transcriptional regulator RABBIT EARS1.5e-1180.56Show/hide
Query:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR
        WP ++Y+C+FC REFKSAQALGGHMNVHRRDRARL+
Subjt:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR

Q9SLB8 Zinc finger protein 118.7e-2060Show/hide
Query:  PWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWV--PENSCPNPNFYSPHPTFFSSTSSSGPQTHQDHRLCFTNQK
        PWP KNY C+FCRREF+SAQALGGHMNVHRRDRA+LR +PSW+  P +  P  N   P+P F SS+SSS    H +  L  TNQ+
Subjt:  PWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWV--PENSCPNPNFYSPHPTFFSSTSSSGPQTHQDHRLCFTNQK

Q9SR34 Transcriptional regulator TAC11.3e-0767.65Show/hide
Query:  AKNYACNFCRREFKSAQALGGHMNVHRRDRARLR
        +++Y C+FC R F +AQALGGHMN+HRRDRA+LR
Subjt:  AKNYACNFCRREFKSAQALGGHMNVHRRDRARLR

Arabidopsis top hitse value%identityAlignment
AT2G37740.1 zinc-finger protein 102.1e-1383.33Show/hide
Query:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR
        WP ++Y C+FCRREFKSAQALGGHMNVHRRDRARL+
Subjt:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR

AT2G42410.1 zinc finger protein 116.2e-2160Show/hide
Query:  PWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWV--PENSCPNPNFYSPHPTFFSSTSSSGPQTHQDHRLCFTNQK
        PWP KNY C+FCRREF+SAQALGGHMNVHRRDRA+LR +PSW+  P +  P  N   P+P F SS+SSS    H +  L  TNQ+
Subjt:  PWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWV--PENSCPNPNFYSPHPTFFSSTSSSGPQTHQDHRLCFTNQK

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein5.4e-1756.16Show/hide
Query:  FPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQTH
        F WP ++Y C+FC+REF+SAQALGGHMNVHRRDRARLRL  S    +S P+P +  P+P +  ST ++ P  H
Subjt:  FPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQTH

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein1.4e-1280.56Show/hide
Query:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR
        WP ++Y CNFCRREF+SAQALGGHMNVHRRDRA  R
Subjt:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR

AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein1.1e-1280.56Show/hide
Query:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR
        WP ++Y+C+FC REFKSAQALGGHMNVHRRDRARL+
Subjt:  WPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGCTTTGTTGAGCAGTGGGAAGGTGAAGGAGAAATGGGATTGTGTAAAGGAACAAACTTTATGTGATGATCATCAGTTCCCATGGCCTGCAAAAAACTATGC
TTGTAATTTTTGCAGGAGAGAATTCAAGTCTGCTCAGGCCCTTGGTGGCCACATGAATGTCCATAGGAGGGACAGGGCAAGATTGAGACTTTTGCCCTCTTGGGTGCCTG
AAAATTCTTGCCCTAACCCTAATTTCTATTCTCCACACCCCACTTTCTTCAGCTCAACTTCTTCCTCAGGCCCCCAAACTCACCAAGATCACCGCTTGTGTTTCACCAAC
CAAAAACATCATGATGAAGATCAAGAAGTTCAAGTTGTGAAGAAGAAGATCAAGAAAAGTTTGGTCAATTTAGAACTCAAGATGGGCATTCATCATTTGGAAGGTTCAAA
TGAGGATGGCCTCGATTTGGAGCTTCGACTT
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGCTTTGTTGAGCAGTGGGAAGGTGAAGGAGAAATGGGATTGTGTAAAGGAACAAACTTTATGTGATGATCATCAGTTCCCATGGCCTGCAAAAAACTATGC
TTGTAATTTTTGCAGGAGAGAATTCAAGTCTGCTCAGGCCCTTGGTGGCCACATGAATGTCCATAGGAGGGACAGGGCAAGATTGAGACTTTTGCCCTCTTGGGTGCCTG
AAAATTCTTGCCCTAACCCTAATTTCTATTCTCCACACCCCACTTTCTTCAGCTCAACTTCTTCCTCAGGCCCCCAAACTCACCAAGATCACCGCTTGTGTTTCACCAAC
CAAAAACATCATGATGAAGATCAAGAAGTTCAAGTTGTGAAGAAGAAGATCAAGAAAAGTTTGGTCAATTTAGAACTCAAGATGGGCATTCATCATTTGGAAGGTTCAAA
TGAGGATGGCCTCGATTTGGAGCTTCGACTT
Protein sequenceShow/hide protein sequence
MDGALLSSGKVKEKWDCVKEQTLCDDHQFPWPAKNYACNFCRREFKSAQALGGHMNVHRRDRARLRLLPSWVPENSCPNPNFYSPHPTFFSSTSSSGPQTHQDHRLCFTN
QKHHDEDQEVQVVKKKIKKSLVNLELKMGIHHLEGSNEDGLDLELRL