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MS020306 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020306
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSignal recognition particle 9 kDa protein
Genome locationscaffold665:899343..901451
RNA-Seq ExpressionMS020306
SyntenyMS020306
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0045900 - negative regulation of translational elongation (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR008832 - Signal recognition particle, SRP9 subunit
IPR009018 - Signal recognition particle, SRP9/SRP14 subunit
IPR039432 - SRP9 domain
IPR039914 - Signal recognition particle SRP9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571487.1 Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]8.7e-5096.12Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGP+VDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_004154105.1 signal recognition particle 9 kDa protein [Cucumis sativus]1.1e-4997.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022146059.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia]2.7e-51100Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_022963515.1 signal recognition particle 9 kDa protein [Cucurbita moschata]3.0e-5097.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

XP_038887366.1 signal recognition particle 9 kDa protein [Benincasa hispida]6.7e-5096.12Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVY+ SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

TrEMBL top hitse value%identityAlignment
A0A1S3BLU0 Signal recognition particle 9 kDa protein5.5e-5097.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1CY87 Signal recognition particle 9 kDa protein1.3e-51100Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1HI87 Signal recognition particle 9 kDa protein1.4e-5097.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1HSA1 Signal recognition particle 9 kDa protein5.5e-5096.12Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL+NIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

A0A6J1K1A1 Signal recognition particle 9 kDa protein5.5e-5097.09Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPDVDISEVTGKEQ DAQPTKKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

SwissProt top hitse value%identityAlignment
O04438 Signal recognition particle 9 kDa protein8.8e-4582.52Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFF LM RGPDVDISEV+GKEQ + Q  KKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        R+Q
Subjt:  RKQ

P21262 Signal recognition particle 9 kDa protein2.0e-1245.21Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLM
        M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK ++    LM
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLM

P34642 Signal recognition particle 9 kDa protein1.5e-1247.76Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNN
        M Y TSWDEF + + +L  ++P   R+  KY H  G+LVLK+TD+  CL++ T+Q QD KK+EKL++
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNN

Q55GL2 Signal recognition particle 9 kDa protein5.0e-1649.3Show/hide
Query:  VYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTL
        +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+++++N++FF L
Subjt:  VYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTL

Q9SMU7 Signal recognition particle 9 kDa protein6.5e-4887.38Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AKKMEKLNNIFFTLMARGPDVD+SEVTGKEQ++ QP KKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ

Arabidopsis top hitse value%identityAlignment
AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit4.6e-4987.38Show/hide
Query:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG
        MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AKKMEKLNNIFFTLMARGPDVD+SEVTGKEQ++ QP KKGRG
Subjt:  MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRG

Query:  RKQ
        RKQ
Subjt:  RKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTACATTACCTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAGCTGTTCCGTTCCGATCCCAATTCAACGCGGTACAACATAAAGTATCGGCACTGCGATGGGAA
ACTGGTTCTTAAGGTCACTGATAACCGTGAGTGTCTCAAGTTCAAGACAGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGG
CCCGGGGCCCTGATGTGGATATATCAGAAGTGACGGGCAAAGAACAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTACATTACCTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAGCTGTTCCGTTCCGATCCCAATTCAACGCGGTACAACATAAAGTATCGGCACTGCGATGGGAA
ACTGGTTCTTAAGGTCACTGATAACCGTGAGTGTCTCAAGTTCAAGACAGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGG
CCCGGGGCCCTGATGTGGATATATCAGAAGTGACGGGCAAAGAACAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAA
Protein sequenceShow/hide protein sequence
MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ