CuGenDBv2

Gene ID	MS020344
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	damaged DNA binding;exodeoxyribonuclease IIIs
Genome location	scaffold665:1194375..1197880
RNA-Seq Expression	MS020344
Synteny	MS020344
Gene Ontology terms	GO:0000077 - DNA damage checkpoint (biological process) GO:0006281 - DNA repair (biological process) GO:0030896 - checkpoint clamp complex (cellular component)
InterPro domains	IPR003021 - Rad1/Rec1/Rad17

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7035494.1 Cell cycle checkpoint protein RAD1 [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-156

89.81

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+++PDLVC LDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRE+FIRYEY+AQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         S  EIKYPGPDMQLL+KSVDS DACIYAEIRTRIPETISWDY FEPAG SPLSFTVKSAALKEAIDDLEWPGSS+QI LEP+PPSVTFKGEGHGDLQAW
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  F----------VDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAF
        F          VDFMYYANTDLLISFHCDR VSYRYKYKFL ATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS  HIDSAGYQQPSRIAF
Subjt:  F----------VDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAF

Query:  IEFFVKPEEDTTND
        IEFFVKPEEDTT+D
Subjt:  IEFFVKPEEDTTND

XP_022146070.1 uncharacterized protein LOC111015362 isoform X1 [Momordica charantia]

3.0e-167

99.01

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
        SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTT
         VDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTT
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTT

Query:  ND
        ND
Subjt:  ND

XP_022957691.1 uncharacterized protein LOC111459157 isoform X1 [Cucurbita moschata]

2.4e-156

92.76

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Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+++PDLVC LDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRE+FIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         S  EIKYPGPDMQLL+KSVDS DACIYAEIRTRIPETISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+QI LEP+PPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS  HIDSAGYQQPSRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        TT+D
Subjt:  TTND

XP_022996322.1 uncharacterized protein LOC111491589 isoform X1 [Cucurbita maxima]

4.1e-156

93.09

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Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+E PDLVC LDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRE+FIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         S  EIKYPGPDMQLL+KSVDSLDACIYAEIRTRIPETISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+QI LEP+PPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS  HIDSAGYQQ SRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        TT+D
Subjt:  TTND

XP_023534468.1 uncharacterized protein LOC111796019 isoform X1 [Cucurbita pepo subsp. pepo]

1.8e-156

92.76

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Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+E PDLVC LDNVQGLVDAFTAVRWKRHQDAVIELSEHG+VLIVEESGCLQAKVYLQRE+FIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         S  EIKYPGPDMQLL+KSVDS DACIYAEIRTRIPETISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+QI LEP+PPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS  HIDSAGYQQPSRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        TT+D
Subjt:  TTND

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4R8 uncharacterized protein LOC103486009

2.2e-155

90.79

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+E PDLVCH DNVQGLVDAFTAVRWKRHQDA+IELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         ST E+KYPGPDMQLL+K+VDSLDACIYAEIRTRIP+TISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+ I L+P+PPSVTFK EGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR+VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGG+LKVQHLVSVA+PSTS  HIDSAGYQQPSRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        ++ND
Subjt:  TTND

A0A5D3DUR6 Syntaxin-22-like protein

2.2e-155

90.79

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+E PDLVCH DNVQGLVDAFTAVRWKRHQDA+IELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         ST E+KYPGPDMQLL+K+VDSLDACIYAEIRTRIP+TISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+ I L+P+PPSVTFK EGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR+VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGG+LKVQHLVSVA+PSTS  HIDSAGYQQPSRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        ++ND
Subjt:  TTND

A0A6J1CW92 uncharacterized protein LOC111015362 isoform X1

1.5e-167

99.01

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
        SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTT
         VDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTT
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTT

Query:  ND
        ND
Subjt:  ND

A0A6J1GZY3 uncharacterized protein LOC111459157 isoform X1

1.2e-156

92.76

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+++PDLVC LDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRE+FIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         S  EIKYPGPDMQLL+KSVDS DACIYAEIRTRIPETISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+QI LEP+PPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS  HIDSAGYQQPSRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        TT+D
Subjt:  TTND

A0A6J1K1L0 uncharacterized protein LOC111491589 isoform X1

2.0e-156

93.09

Show/hide

Query:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR
        MSSSAVD+E PDLVC LDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRE+FIRYEYSAQARPRFGVSLG FVDSLNTFSVPGR
Subjt:  MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGR

Query:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW
         S  EIKYPGPDMQLL+KSVDSLDACIYAEIRTRIPETISWDY FEPAGSSPLSFTVKSAALKEAIDDLEWPGSS+QI LEP+PPSVTFKGEGHGDLQ  
Subjt:  SSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAW

Query:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED
         VDFMYYANTDLLISFHCDR VSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS  HIDSAGYQQ SRIAFIEFFVKPEED
Subjt:  FVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTS--HIDSAGYQQPSRIAFIEFFVKPEED

Query:  TTND
        TT+D
Subjt:  TTND

SwissProt top hits

e value

%identity

Alignment

Q9QWZ1 Cell cycle checkpoint protein RAD1

6.6e-16

24.91

Show/hide

Query:  LVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFS---VPGRSSTTEIKYP
        LV  LDNV+ L     A+ ++ H  A    +++GI + VE + C+QA  ++Q ++F  +    ++   F ++L   +D L+ F     PG  +   + Y 
Subjt:  LVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFS---VPGRSSTTEIKYP

Query:  GPDMQLLIKSVDSLDACIYAEIRTRIP-ETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSV---TFKGEGHGDLQAWFVDFM
        G    L++  ++        +I T+ P ET+ +D+    + +      ++S  L+EA  +L+  G  +QI + P  P     TF   G+  L        
Subjt:  GPDMQLLIKSVDSLDACIYAEIRTRIP-ETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSV---TFKGEGHGDLQAWFVDFM

Query:  YYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEED
        Y  ++DL+ +FHCD+    RYK   L+ +T  +  S     + S  T  R G L +Q+++                +  +I F+E++  P+E+
Subjt:  YYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEED

Arabidopsis top hits

e value

%identity

Alignment

AT4G17760.1 damaged DNA binding;exodeoxyribonuclease IIIs

1.1e-135

76.35

Show/hide

Query:  SSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGRS
        SS A++ +TPDL+C LDNVQG+VDA T VRWKRHQDA++ELSEHGIVLIVEESGCLQAKVYLQRELF +YEY AQ RPRFG+SLG  VD LNTFS PG S
Subjt:  SSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGRS

Query:  STTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAWF
        +T EIKYPGPDM+LL+KSVD+L++CIY+EIRTRIPET++WDY FE AG +PL+FTVKSAALKEAIDDLEWPGSS+QI L+  PP V F+GEGHGDLQ   
Subjt:  STTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAWF

Query:  VDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEE
        +DFMYYANTDLL++FHCD  VSY YKYKFL+ATT+NIP +V+RENRGSKLTIGRGGMLKVQHLVSV++     ++SAGYQ PSRIA+IEFFVKPEE
Subjt:  VDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEE

AT4G17760.2 damaged DNA binding;exodeoxyribonuclease IIIs

2.1e-110

76.33

Show/hide

Query:  ESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGRSSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSP
        ESGCLQAKVYLQRELF +YEY AQ RPRFG+SLG  VD LNTFS PG S+T EIKYPGPDM+LL+KSVD+L++CIY+EIRTRIPET++WDY FE AG +P
Subjt:  ESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGRSSTTEIKYPGPDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSP

Query:  LSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAWFVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLT
        L+FTVKSAALKEAIDDLEWPGSS+QI L+  PP V F+GEGHGDLQ   +DFMYYANTDLL++FHCD  VSY YKYKFL+ATT+NIP +V+RENRGSKLT
Subjt:  LSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAWFVDFMYYANTDLLISFHCDRRVSYRYKYKFLRATTSNIPSSVIRENRGSKLT

Query:  IGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEE
        IGRGGMLKVQHLVSV++     ++SAGYQ PSRIA+IEFFVKPEE
Subjt:  IGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGCTCGTCGGCGGTAGATTCAGAGACGCCCGATCTGGTTTGCCACCTTGACAACGTCCAAGGCCTGGTGGATGCCTTCACTGCTGTTAGATGGAAACGCCATCAGGA
CGCCGTAATCGAACTATCAGAGCATGGCATCGTTTTGATCGTTGAAGAATCCGGCTGTCTTCAAGCCAAAGTGTATCTGCAGCGTGAGCTTTTCATTCGTTATGAATACA
GTGCACAAGCTCGGCCAAGATTTGGAGTGAGCTTAGGCACTTTTGTTGATAGTTTGAATACGTTTTCTGTTCCTGGACGTTCAAGCACCACTGAAATCAAATACCCGGGA
CCTGACATGCAACTTCTAATCAAGTCAGTCGATTCATTAGATGCGTGCATTTATGCGGAGATCAGAACCAGAATCCCAGAGACAATCTCGTGGGATTACATTTTTGAACC
TGCAGGAAGCAGTCCACTCAGTTTCACTGTCAAGTCTGCAGCTCTGAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGCATCCAGATAGTTCTCGAACCGGCTC
CCCCTTCTGTCACCTTCAAAGGCGAAGGCCATGGAGACTTGCAGGCATGGTTTGTAGATTTCATGTACTATGCAAACACTGATCTTCTGATCTCGTTCCATTGCGATCGT
CGGGTATCATACAGGTACAAGTACAAATTTCTACGAGCGACGACTTCCAACATACCGAGCAGCGTGATTAGAGAAAACAGGGGAAGCAAGTTGACTATTGGGAGAGGAGG
AATGCTAAAAGTTCAGCACTTGGTTTCTGTGGCAAGACCATCCACTTCGCATATAGATTCTGCTGGTTATCAGCAACCCAGCAGAATTGCTTTCATTGAGTTTTTTGTGA
AACCAGAGGAGGACACCACAAATGAT

mRNA sequence

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Protein sequence

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MSSSAVDSETPDLVCHLDNVQGLVDAFTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLQRELFIRYEYSAQARPRFGVSLGTFVDSLNTFSVPGRSSTTEIKYPG
PDMQLLIKSVDSLDACIYAEIRTRIPETISWDYIFEPAGSSPLSFTVKSAALKEAIDDLEWPGSSIQIVLEPAPPSVTFKGEGHGDLQAWFVDFMYYANTDLLISFHCDR
RVSYRYKYKFLRATTSNIPSSVIRENRGSKLTIGRGGMLKVQHLVSVARPSTSHIDSAGYQQPSRIAFIEFFVKPEEDTTND

MS020344 (gene) of Bitter gourd (TR) v1 genome