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MS020374 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020374
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-type domain-containing protein
Genome locationscaffold211:31093..31647
RNA-Seq ExpressionMS020374
SyntenyMS020374
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571418.1 hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia]7.5e-2057.27Show/hide
Query:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCK--CKMSEEGMENQVVPEMLEQNNNNNKSFRKR
        MDDKS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ SL SHHCK   K  +E MEN+V     E+    +KS RKR
Subjt:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCK--CKMSEEGMENQVVPEMLEQNNNNNKSFRKR

Query:  SRKGIPTRAP
        +RKGIPTRAP
Subjt:  SRKGIPTRAP

KAG7011182.1 hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1956.36Show/hide
Query:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCK--CKMSEEGMENQVVPEMLEQNNNNNKSFRKR
        MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ SL SHHCK   K  +E MEN+V     E+    +KS RKR
Subjt:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCK--CKMSEEGMENQVVPEMLEQNNNNNKSFRKR

Query:  SRKGIPTRAP
        +RKGIPTRAP
Subjt:  SRKGIPTRAP

XP_022149553.1 uncharacterized protein LOC111017959 [Momordica charantia]9.7e-5296.33Show/hide
Query:  MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKRSRK
        MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC  KMSEEGMENQVVPEML+QNNNN KSFRKRSRK
Subjt:  MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKRSRK

Query:  GIPTRAPLF
        GIPTRAPLF
Subjt:  GIPTRAPLF

XP_022928048.1 uncharacterized protein LOC111434950 [Cucurbita moschata]1.7e-1955.36Show/hide
Query:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKR
        MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ SL SHHCK   K   E  EN+V     E+    +KS RKR
Subjt:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKR

Query:  SRKGIPTRAPLF
        +RKGIPTRAP F
Subjt:  SRKGIPTRAPLF

XP_023511836.1 uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]2.0e-2056.25Show/hide
Query:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCK--CKMSEEGMENQVVPEMLEQNNNNNKSFRKR
        MDDKS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ SL SHHCK   K  +E MEN+V     ++    +KS RKR
Subjt:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCK--CKMSEEGMENQVVPEMLEQNNNNNKSFRKR

Query:  SRKGIPTRAPLF
        +RKGIPTRAP F
Subjt:  SRKGIPTRAPLF

TrEMBL top hitse value%identityAlignment
A0A0A0LQ06 C2H2-type domain-containing protein1.6e-2055.08Show/hide
Query:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGCRFGIEISLHSHHCKCKMSEEGMENQVVPEMLEQNN--NNN
        MDDKSLPYNLRLR   K+S+PTE SK   KH+RDFQEK  ++      + ++ RCEKCGC F IE SL SHHCK K   E ME       +E +     N
Subjt:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGCRFGIEISLHSHHCKCKMSEEGMENQVVPEMLEQNN--NNN

Query:  KSFRKRSRKGIPTRAPLF
        KSFRK+SRKG+P RAP F
Subjt:  KSFRKRSRKGIPTRAPLF

A0A6J1D739 uncharacterized protein LOC1110179594.7e-5296.33Show/hide
Query:  MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKRSRK
        MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC  KMSEEGMENQVVPEML+QNNNN KSFRKRSRK
Subjt:  MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKRSRK

Query:  GIPTRAPLF
        GIPTRAPLF
Subjt:  GIPTRAPLF

A0A6J1EMR9 uncharacterized protein LOC1114349508.1e-2055.36Show/hide
Query:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKR
        MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ SL SHHCK   K   E  EN+V     E+    +KS RKR
Subjt:  MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKC--KMSEEGMENQVVPEMLEQNNNNNKSFRKR

Query:  SRKGIPTRAPLF
        +RKGIPTRAP F
Subjt:  SRKGIPTRAPLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAAATCGCTACCTTATAATCTTCGACTACGAAAAGCTTCTGCTCCAACTGAACCTTCCAAGATCAACCAGAAGCATGAAAGAGATTTTCAGGAAAAAGGAGA
TGAAGAAATAGGTTTGGAGCAGCGATGTGAAAAATGTGGGTGTCGTTTTGGTATTGAAATCTCTCTTCATTCACACCATTGCAAGTGCAAGATGAGCGAGGAGGGGATGG
AAAATCAAGTGGTACCAGAAATGTTGGAGCAAAATAATAATAATAATAAATCCTTCAGAAAAAGAAGCAGGAAGGGAATACCAACACGGGCTCCTCTTTTT
mRNA sequenceShow/hide mRNA sequence
ATGGATGACAAATCGCTACCTTATAATCTTCGACTACGAAAAGCTTCTGCTCCAACTGAACCTTCCAAGATCAACCAGAAGCATGAAAGAGATTTTCAGGAAAAAGGAGA
TGAAGAAATAGGTTTGGAGCAGCGATGTGAAAAATGTGGGTGTCGTTTTGGTATTGAAATCTCTCTTCATTCACACCATTGCAAGTGCAAGATGAGCGAGGAGGGGATGG
AAAATCAAGTGGTACCAGAAATGTTGGAGCAAAATAATAATAATAATAAATCCTTCAGAAAAAGAAGCAGGAAGGGAATACCAACACGGGCTCCTCTTTTT
Protein sequenceShow/hide protein sequence
MDDKSLPYNLRLRKASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEISLHSHHCKCKMSEEGMENQVVPEMLEQNNNNNKSFRKRSRKGIPTRAPLF