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MS020384 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020384
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-type domain-containing protein
Genome locationscaffold211:133629..134089
RNA-Seq ExpressionMS020384
SyntenyMS020384
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651931.1 hypothetical protein Csa_006531, partial [Cucumis sativus]2.0e-1754.95Show/hide
Query:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFR
        MDDKSLPYNLRLR   K+S+ TE SK   KH+RDFQEK  ++      + ++ RCEKCGC FD+E SL SHHCK   N+   E +E   +     NKSFR
Subjt:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFR

Query:  KRSRKGIPRRA
        K+SRKG+PRRA
Subjt:  KRSRKGIPRRA

KAG6571418.1 hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia]9.0e-1856.6Show/hide
Query:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG
        MDDKS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC FDL+ SL SHHCK   N+   E +E         +KS RKR+RKG
Subjt:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG

Query:  IPRRAP
        IP RAP
Subjt:  IPRRAP

KAG7011182.1 hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-1755.66Show/hide
Query:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG
        MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC FDL+ SL SHHCK   N+   E +E         +KS RKR+RKG
Subjt:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG

Query:  IPRRAP
        IP RAP
Subjt:  IPRRAP

XP_022149553.1 uncharacterized protein LOC111017959 [Momordica charantia]8.3e-4081.25Show/hide
Query:  MDDKSLPYNLRLRKASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKV--------MENEVVPEILEQNNNNNNNNNKSFRK
        MDDKSLPYNLRLRKASA TEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRF +EISLHSHHCK         MEN+VVPE+L+Q    NNNN KSFRK
Subjt:  MDDKSLPYNLRLRKASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKV--------MENEVVPEILEQNNNNNNNNNKSFRK

Query:  RSRKGIPRRAPL
        RSRKGIP RAPL
Subjt:  RSRKGIPRRAPL

XP_023511836.1 uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]6.9e-1856.6Show/hide
Query:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG
        MDDKS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC FDL+ SL SHHCK   N+   E +E   +     +KS RKR+RKG
Subjt:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG

Query:  IPRRAP
        IP RAP
Subjt:  IPRRAP

TrEMBL top hitse value%identityAlignment
A0A0A0LQ06 C2H2-type domain-containing protein1.5e-1855.36Show/hide
Query:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFR
        MDDKSLPYNLRLR   K+S+ TE SK   KH+RDFQEK  ++      + ++ RCEKCGC FD+E SL SHHCK   N+   E +E   +     NKSFR
Subjt:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFR

Query:  KRSRKGIPRRAP
        K+SRKG+PRRAP
Subjt:  KRSRKGIPRRAP

A0A6J1D739 uncharacterized protein LOC1110179594.0e-4081.25Show/hide
Query:  MDDKSLPYNLRLRKASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKV--------MENEVVPEILEQNNNNNNNNNKSFRK
        MDDKSLPYNLRLRKASA TEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRF +EISLHSHHCK         MEN+VVPE+L+Q    NNNN KSFRK
Subjt:  MDDKSLPYNLRLRKASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKV--------MENEVVPEILEQNNNNNNNNNKSFRK

Query:  RSRKGIPRRAPL
        RSRKGIP RAPL
Subjt:  RSRKGIPRRAPL

A0A6J1EMR9 uncharacterized protein LOC1114349504.8e-1755.66Show/hide
Query:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG
        MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC FDL+ SL SHHCK   N+   E  E         +KS RKR+RKG
Subjt:  MDDKSLPYNLRLR---KASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKG

Query:  IPRRAP
        IP RAP
Subjt:  IPRRAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAAATCGCTCCCTTATAATCTTCGACTACGAAAGGCTTCTGCTCAAACTGAACCTTCCAAGATCAACCAGAAGCATGAAAGAGATTTTCAGGAAAAAGGAGA
TGAAGAAATAGGTTTGGAGCAGCGATGTGAAAAATGTGGGTGTCGTTTTGACCTTGAAATCTCTCTTCATTCACACCATTGCAAGGTAATGGAAAATGAAGTAGTACCAG
AGATATTGGAGCAAAATAATAATAATAATAATAATAATAATAAATCCTTCAGAAAAAGAAGCAGGAAAGGAATACCAAGACGGGCTCCTCTTCTT
mRNA sequenceShow/hide mRNA sequence
ATGGATGACAAATCGCTCCCTTATAATCTTCGACTACGAAAGGCTTCTGCTCAAACTGAACCTTCCAAGATCAACCAGAAGCATGAAAGAGATTTTCAGGAAAAAGGAGA
TGAAGAAATAGGTTTGGAGCAGCGATGTGAAAAATGTGGGTGTCGTTTTGACCTTGAAATCTCTCTTCATTCACACCATTGCAAGGTAATGGAAAATGAAGTAGTACCAG
AGATATTGGAGCAAAATAATAATAATAATAATAATAATAATAAATCCTTCAGAAAAAGAAGCAGGAAAGGAATACCAAGACGGGCTCCTCTTCTT
Protein sequenceShow/hide protein sequence
MDDKSLPYNLRLRKASAQTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFDLEISLHSHHCKVMENEVVPEILEQNNNNNNNNNKSFRKRSRKGIPRRAPLL