CuGenDBv2

Gene ID	MS020388
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome location	scaffold211:165350..168200
RNA-Seq Expression	MS020388
Synteny	MS020388
Gene Ontology terms	GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]

7.4e-73

87.57

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKKGETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKRKK+KSSGI+TV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALRLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-73

88.14

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKKGETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKRKK+KSSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALRLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

XP_022158697.1 uncharacterized protein LOC111025162 [Momordica charantia]

3.4e-86

99.44

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTKN
        SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALR LSSSGLLTKN
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTKN

XP_022947715.1 uncharacterized protein LOC111451498 [Cucurbita moschata]

2.2e-72

87.57

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKK ETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKRKK+KSSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALRLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

XP_023533260.1 uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo]

2.0e-73

88.14

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EITKVQ ES ARVVREGKERRR WAEKKTPRPSKKGETVEDVAE P H DQ SKLGML SNLVQLLA+REKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKR+K+KSSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALRLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM07 Uncharacterized protein

5.4e-69

81.92

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD E+TDSDAPEEFTAEQG+QQD+EI KVQ ESKARV+REGKERRRLWAEKKTPRPSKKGE VED+AE P + D+ SKLG LPSN+VQLL DREKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SD GDEKPA KPK KRKKTKSSGIETV+LN+R P+ CLQNS+EFLKKRKMN+ RSS+VL NPNQA RLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

A0A5A7TWK6 Uncharacterized protein

1.7e-67

81.46

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD E+TDSDAPEEFTAEQG+QQD+EI KVQNESKARV+REGKERRRLWAEKKTPRPSKKGE VED+AE P + D+ SKLG LPSN+VQLL DREKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTK-SSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SD GDEKPA KPK KRKKTK SSGIETV+L++R P+ CLQNS+EFLKKRKMN+ RSS+VL+NPNQA RLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTK-SSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

A0A6J1DXW1 uncharacterized protein LOC111025162

1.7e-86

99.44

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTKN
        SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALR LSSSGLLTKN
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTKN

A0A6J1G7P4 uncharacterized protein LOC111451498

1.0e-72

87.57

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKK ETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKRKK+KSSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALRLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

A0A6J1KZ49 uncharacterized protein LOC111499570

2.3e-72

86.44

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Query:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI K+Q ES ARVVREGKERRR WAEKKTPRPSKKGETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        SDPGDEKPAAK KT+R+K+KSSGIETV+LN R P+QC QNS+EFLKKRKMNIPRSSSVLDN NQALRLLSSSGLLTK
Subjt:  SDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G37090.1 unknown protein

9.2e-29

45.05

Show/hide

Query:  MSDGE--DTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKL---GMLPSNLVQLLADRE
        MSD +  D+DSDAPEE T EQ   +++ + K+Q E+K RV RE KERR+L AE+ T R S+K E +EDV E     + S  L   G L  +++  LA+RE
Subjt:  MSDGE--DTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKL---GMLPSNLVQLLADRE

Query:  KQVFSSDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        KQ   SD  +E+       ++KK KSSGIETV+  +  P +CL+  ++FLK R+  +PRSSSV+ N  QALRL + + L  K
Subjt:  KQVFSSDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

AT4G37090.2 unknown protein

1.7e-27

45.05

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Query:  MSDGE--DTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKL---GMLPSNLVQLLADRE
        MSD +  D+DSDAPEE T EQ   +++ + K+Q E+K RV RE KERR+L AE+ T R S+K E +EDV E     + S  L   G L  +++  LA+RE
Subjt:  MSDGE--DTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKL---GMLPSNLVQLLADRE

Query:  KQVFSSDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK
        KQ   SD  +E+       ++KK KSSGIETV+  +  P +CL+  ++FLK R+  +PRSSSV+ N  QALRL + + L  K
Subjt:  KQVFSSDPGDEKPAAKPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTK

Sequences

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CDS sequence

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ATGTCGGACGGAGAAGATACCGATTCCGACGCCCCCGAGGAGTTCACCGCCGAGCAGGGAATACAGCAAGATCAAGAGATTACGAAAGTTCAAAATGAAAGTAAGGCCAG
GGTTGTTCGTGAAGGAAAAGAGCGTCGTAGACTGTGGGCCGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAACTGTCGAAGATGTAGCCGAAATCCCAAGTCATA
TAGATCAAAGTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCAGATCGTGAGAAACAAGTTTTCTCGTCGGACCCTGGAGATGAAAAGCCTGCAGCA
AAGCCAAAAACAAAGAGGAAAAAAACCAAAAGCTCAGGGATTGAAACGGTTGTTTTAAACAAAAGACAACCGGCTCAATGTTTACAGAATTCCATGGAATTTTTGAAGAA
AAGGAAGATGAATATTCCAAGGTCGTCGTCGGTTCTCGACAATCCTAACCAAGCATTACGCCTTCTTTCTTCATCCGGCTTGCTAACTAAGAAT

mRNA sequence

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Protein sequence

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MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKKGETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFSSDPGDEKPAA
KPKTKRKKTKSSGIETVVLNKRQPAQCLQNSMEFLKKRKMNIPRSSSVLDNPNQALRLLSSSGLLTKN

MS020388 (gene) of Bitter gourd (TR) v1 genome