; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020394 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020394
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold211:223694..224176
RNA-Seq ExpressionMS020394
SyntenyMS020394
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI39106.1 hypothetical protein CRG98_040530 [Punica granatum]7.0e-3043.57Show/hide
Query:  KPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHS
        KP + W  + W  PP    K+NTDG+S+GNP +A AGG+I   +G WI GF  N+G  T+ +A+LWG L GLELAW+ G R + +E DS V   ++ N  
Subjt:  KPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHS

Query:  RPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
          N+ + PL+  I  ++ ++W+V + H Y+E+N CADW+A
Subjt:  RPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

PKI42247.1 hypothetical protein CRG98_037363 [Punica granatum]3.0e-3345.86Show/hide
Query:  ITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSL
        +  SF   W L + +     R W++I W  P  +  KLNTDG  +G+  +  AGGI+RNS G WI GF Q++G +T  VAELWG+LTGLELAW   CR L
Subjt:  ITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSL

Query:  EIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
         IE DS+V   ++L     +   QPL R I  L+ ++W V I+H Y E N CADWL+
Subjt:  EIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

PKI65311.1 hypothetical protein CRG98_014275 [Punica granatum]3.5e-2944.76Show/hide
Query:  LSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMIL
        ++RK V+ W  + W  P     KLNTDG+S+GNPS A AGG++R  +G WI GF + +G  TA VAELWG+L+GLELAWELG R + +E DS++   +I 
Subjt:  LSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMIL

Query:  NHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
                ++ ++R I   ++++W V + H YRE N  ADW+A
Subjt:  NHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

XP_031376896.1 uncharacterized protein LOC116192475 [Punica granatum]1.2e-3242.5Show/hide
Query:  VRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGC
        +R    +F H+ +L ++ S +P R W  I W  PP    K+NTDG+S+GNP +A AGG++RN +G+WI GF  N+G  T+ +AELWG L GL+LAW+ G 
Subjt:  VRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGC

Query:  RSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
        R + +E DS V   ++ + S  N  ++PL+  I+ ++ ++W++ + H YRE N CADW+A
Subjt:  RSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]1.2e-2940.99Show/hide
Query:  TVRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELG
        ++ R  +SF   W     + R+ VR W  + W  P     KLNTDG+S+GNP  A AGG++R  +G W   F +N+G  TA+VAELWG+L+GLELAWELG
Subjt:  TVRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELG

Query:  CRSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
         R + +E DS++   +I         ++ ++R+I   ++++W V + H YRE N  ADW+A
Subjt:  CRSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

TrEMBL top hitse value%identityAlignment
A0A2I0I6R1 RNase H domain-containing protein3.4e-3043.57Show/hide
Query:  KPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHS
        KP + W  + W  PP    K+NTDG+S+GNP +A AGG+I   +G WI GF  N+G  T+ +A+LWG L GLELAW+ G R + +E DS V   ++ N  
Subjt:  KPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHS

Query:  RPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
          N+ + PL+  I  ++ ++W+V + H Y+E+N CADW+A
Subjt:  RPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

A0A2I0IE25 RNase H domain-containing protein1.5e-3345.86Show/hide
Query:  ITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSL
        +  SF   W L + +     R W++I W  P  +  KLNTDG  +G+  +  AGGI+RNS G WI GF Q++G +T  VAELWG+LTGLELAW   CR L
Subjt:  ITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSL

Query:  EIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
         IE DS+V   ++L     +   QPL R I  L+ ++W V I+H Y E N CADWL+
Subjt:  EIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

A0A2I0K9U3 RNase H domain-containing protein1.7e-2944.76Show/hide
Query:  LSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMIL
        ++RK V+ W  + W  P     KLNTDG+S+GNPS A AGG++R  +G WI GF + +G  TA VAELWG+L+GLELAWELG R + +E DS++   +I 
Subjt:  LSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMIL

Query:  NHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
                ++ ++R I   ++++W V + H YRE N  ADW+A
Subjt:  NHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

A0A6P8C599 uncharacterized protein LOC1161924755.6e-3342.5Show/hide
Query:  VRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGC
        +R    +F H+ +L ++ S +P R W  I W  PP    K+NTDG+S+GNP +A AGG++RN +G+WI GF  N+G  T+ +AELWG L GL+LAW+ G 
Subjt:  VRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGC

Query:  RSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
        R + +E DS V   ++ + S  N  ++PL+  I+ ++ ++W++ + H YRE N CADW+A
Subjt:  RSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

A0A6P8E5K3 uncharacterized protein LOC1162123245.8e-3040.99Show/hide
Query:  TVRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELG
        ++ R  +SF   W     + R+ VR W  + W  P     KLNTDG+S+GNP  A AGG++R  +G W   F +N+G  TA+VAELWG+L+GLELAWELG
Subjt:  TVRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELG

Query:  CRSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
         R + +E DS++   +I         ++ ++R+I   ++++W V + H YRE N  ADW+A
Subjt:  CRSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.3e-2338.41Show/hide
Query:  HSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDS
        HS N++  +++  V   +   W  P +   K+NTDG+S+GNP +A AGG++R+  G W  GF  NIG  +A  AELWG+  GL  AWE     +E+E DS
Subjt:  HSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDS

Query:  IVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA
         V    +      +  +  L+R     + ++W V I H+YREAN  AD LA
Subjt:  IVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA

Arabidopsis top hitse value%identityAlignment
AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.0e-0729.77Show/hide
Query:  WTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIK-GFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPL
        W  P     K N D S+      +    IIRNS+G  +  G  +  G  T   AE   ++  ++ AW+LG R +E E D+I   N ++ +   N  ++  
Subjt:  WTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIK-GFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPL

Query:  LRKITQLMDQNWNVSIKHIYREANYCADWLA
        L  I Q       V     +RE N C D LA
Subjt:  LRKITQLMDQNWNVSIKHIYREANYCADWLA

AT3G25270.1 Ribonuclease H-like superfamily protein6.8e-0730.84Show/hide
Query:  TDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTT--ALVAELWGILTGLELAWELGCRS
        T++++ S N     SR    +     W  PP    K N DG+       A+AG ++R+  G ++ G  Q IGSTT  +L +E   ++  ++ AW  G R 
Subjt:  TDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTT--ALVAELWGILTGLELAWELGCRS

Query:  LEIETDS
        +  E DS
Subjt:  LEIETDS

AT4G03292.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0734.23Show/hide
Query:  SWNLVASLSRKPVRSWVNITWTPPPINCWKLNTD-GSSQGNPSMARAGGIIRNSEGNWIK-GFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETD
        SWNL       P+ + +N+T     +   K N D G  QG+P   R+G IIR S G+ I  G  +   ST++L AE+ G L  L++ W  G R +  ETD
Subjt:  SWNLVASLSRKPVRSWVNITWTPPPINCWKLNTD-GSSQGNPSMARAGGIIRNSEGNWIK-GFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETD

Query:  SIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCAD
        +      +LN+   + ++ PLL  I   M +    SI  + RE N  AD
Subjt:  SIVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCAD

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.6e-1837.39Show/hide
Query:  ITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W  P +   K+NTDG+S+GNP +A AGG++R+ EG W  GF  NIG  +A  AELWG+  GL  AWE     +E+E DS      +      +  +  
Subjt:  ITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQNWNV
        L+R     + ++W +
Subjt:  LLRKITQLMDQNWNV

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-1533.85Show/hide
Query:  WTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPLL
        WTPP +   KLN  G+S     + R+ GI+R+  G W+ G+ +   S   +VA L  I  GL+  W+ G R + +ET S    N +   S      + LL
Subjt:  WTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPLL

Query:  RKITQLMDQNWNVSIKHIYREANYCADWLA
             ++ + W   I HI +E N CA+WLA
Subjt:  RKITQLMDQNWNVSIKHIYREANYCADWLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAGTAAGACGAATTACTGACAGTTTCATCCATTCATGGAACTTAGTGGCCTCTTTGTCAAGAAAACCAGTCCGAAGCTGGGTCAATATCACATGGACTCCCCCTCCGAT
TAATTGTTGGAAATTGAATACAGATGGATCTTCACAAGGTAATCCGAGTATGGCAAGGGCAGGAGGGATCATAAGGAATTCAGAGGGGAATTGGATTAAAGGCTTTCAGC
AAAATATTGGAAGCACAACGGCTCTGGTAGCAGAGTTATGGGGAATCTTAACGGGTTTAGAGTTGGCTTGGGAGCTAGGGTGCCGCTCTTTGGAAATAGAAACAGATTCT
ATTGTAGCTTGCAATATGATTCTGAACCACTCTCGGCCTAATACCATCATCCAACCATTGTTGAGGAAGATCACACAGCTGATGGATCAGAATTGGAATGTTTCGATTAA
GCATATCTATAGAGAGGCCAATTACTGTGCGGACTGGTTAGCT
mRNA sequenceShow/hide mRNA sequence
ACAGTAAGACGAATTACTGACAGTTTCATCCATTCATGGAACTTAGTGGCCTCTTTGTCAAGAAAACCAGTCCGAAGCTGGGTCAATATCACATGGACTCCCCCTCCGAT
TAATTGTTGGAAATTGAATACAGATGGATCTTCACAAGGTAATCCGAGTATGGCAAGGGCAGGAGGGATCATAAGGAATTCAGAGGGGAATTGGATTAAAGGCTTTCAGC
AAAATATTGGAAGCACAACGGCTCTGGTAGCAGAGTTATGGGGAATCTTAACGGGTTTAGAGTTGGCTTGGGAGCTAGGGTGCCGCTCTTTGGAAATAGAAACAGATTCT
ATTGTAGCTTGCAATATGATTCTGAACCACTCTCGGCCTAATACCATCATCCAACCATTGTTGAGGAAGATCACACAGCTGATGGATCAGAATTGGAATGTTTCGATTAA
GCATATCTATAGAGAGGCCAATTACTGTGCGGACTGGTTAGCT
Protein sequenceShow/hide protein sequence
TVRRITDSFIHSWNLVASLSRKPVRSWVNITWTPPPINCWKLNTDGSSQGNPSMARAGGIIRNSEGNWIKGFQQNIGSTTALVAELWGILTGLELAWELGCRSLEIETDS
IVACNMILNHSRPNTIIQPLLRKITQLMDQNWNVSIKHIYREANYCADWLA