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MS020395 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020395
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationscaffold211:233501..233752
RNA-Seq ExpressionMS020395
SyntenyMS020395
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605261.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-2977.38Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL   A+L LP GA WEVELKKSDGKV F RGWPEFVEFY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

XP_022158235.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]5.5e-42100Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

XP_022947007.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita moschata]4.1e-2977.38Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL   A+L LP GA WEVELKKSDGKV F RGWPEFVEFY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

XP_022947008.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita moschata]4.1e-2977.38Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL   A+L LP GA WEVELKKSDGKV F RGWPEFVEFY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

XP_023532571.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]3.1e-2977.38Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL  +A+L LP GA WEVELKKSDGKV F RGWPEFVEFY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

TrEMBL top hitse value%identityAlignment
A0A5A7TS22 B3 domain-containing transcription factor VRN1-like2.0e-2666.67Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV NNGGS+L    +L LP GA W+++LKKSDGK++F RGWPEFV+FYSV+ GYF+VF+ +G CCFNV+IFD SATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

A0A6J1DVA1 B3 domain-containing transcription factor VRN1-like2.6e-42100Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

A0A6J1G597 B3 domain-containing transcription factor VRN1-like isoform X12.0e-2977.38Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL   A+L LP GA WEVELKKSDGKV F RGWPEFVEFY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

A0A6J1G5F5 B3 domain-containing transcription factor VRN1-like isoform X22.0e-2977.38Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL   A+L LP GA WEVELKKSDGKV F RGWPEFVEFY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

A0A6J1L7I9 B3 domain-containing transcription factor VRN1-like4.4e-2976.19Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        LP KFV+NN  SLL   A+L LP GA WEVELKKSDGKV F RGWPEFV+FY+VK GYFVVFR EGN CFNV+IFDLSATE+DY
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

SwissProt top hitse value%identityAlignment
Q7XS75 Putative B3 domain-containing protein Os04g03469004.4e-1036.05Show/hide
Query:  LPKKFVMN--NGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P KFV +   G +L    A +  P G  W VEL K    V+ G GW +F+ F+ +  G  V+FRYEGN  F + +F  +  + D+
Subjt:  LPKKFVMN--NGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

Q84R27 B3 domain-containing protein At3g189603.6e-1239.29Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P +FV    GS L    +L  P+G K  ++LK+   ++WF  GW EF E +S++ G+F++F Y+ N  F V+IF++SA E  Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

Q8L3W1 B3 domain-containing transcription factor VRN11.4e-1647.62Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P KFV      L    A L +P G  W V L+K+D K+WF  GW EFV+ YS+++GY ++FRYEGN  F+V IF+LS +E++Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

Q9XIB4 B3 domain-containing protein At1g494758.5e-1442.86Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P +FV    G  L    +L+ P G K  + +K+   +VWF +GW EF E +S+  G+F+ F YEG+ CF VVIFD+SA+E++Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

Q9ZSH7 B3 domain-containing protein At4g015808.0e-1239.29Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P +FV    GS L    +L  P+G K  ++LK+   ++WF  GW EF E +S++ G+F++F Y+ N  F V+IF+ SA E +Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein6.1e-1542.86Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P +FV    G  L    +L+ P G K  + +K+   +VWF +GW EF E +S+  G+F+ F YEG+ CF VVIFD+SA+E++Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

AT3G18960.1 AP2/B3-like transcriptional factor family protein2.5e-1339.29Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P +FV    GS L    +L  P+G K  ++LK+   ++WF  GW EF E +S++ G+F++F Y+ N  F V+IF++SA E  Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

AT3G18990.1 AP2/B3-like transcriptional factor family protein1.0e-1747.62Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P KFV      L    A L +P G  W V L+K+D K+WF  GW EFV+ YS+++GY ++FRYEGN  F+V IF+LS +E++Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY

AT3G53310.1 AP2/B3-like transcriptional factor family protein2.5e-0841.27Show/hide
Query:  LQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFD
        L +T  L+   G  W V LKK  G  +  RGWP+F E + +K G F+ F Y+G+  F V +FD
Subjt:  LQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFD

AT4G01580.1 AP2/B3-like transcriptional factor family protein5.7e-1339.29Show/hide
Query:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY
        +P +FV    GS L    +L  P+G K  ++LK+   ++WF  GW EF E +S++ G+F++F Y+ N  F V+IF+ SA E +Y
Subjt:  LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCCGAAGAAGTTCGTGATGAACAATGGCGGCTCTCTGTTACAAAGGACGGCCAGTTTAAGGCTTCCGAGCGGCGCAAAGTGGGAGGTGGAATTGAAGAAATCGGACGG
CAAAGTCTGGTTCGGAAGAGGCTGGCCGGAATTCGTGGAGTTTTACTCTGTGAAATTGGGATATTTCGTGGTTTTCCGCTACGAAGGAAATTGCTGCTTCAACGTCGTCA
TATTCGACCTCAGCGCCACGGAAATGGATTAT
mRNA sequenceShow/hide mRNA sequence
CTTCCGAAGAAGTTCGTGATGAACAATGGCGGCTCTCTGTTACAAAGGACGGCCAGTTTAAGGCTTCCGAGCGGCGCAAAGTGGGAGGTGGAATTGAAGAAATCGGACGG
CAAAGTCTGGTTCGGAAGAGGCTGGCCGGAATTCGTGGAGTTTTACTCTGTGAAATTGGGATATTTCGTGGTTTTCCGCTACGAAGGAAATTGCTGCTTCAACGTCGTCA
TATTCGACCTCAGCGCCACGGAAATGGATTAT
Protein sequenceShow/hide protein sequence
LPKKFVMNNGGSLLQRTASLRLPSGAKWEVELKKSDGKVWFGRGWPEFVEFYSVKLGYFVVFRYEGNCCFNVVIFDLSATEMDY