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MS020397 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020397
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein At4g01580-like
Genome locationscaffold211:259904..260155
RNA-Seq ExpressionMS020397
SyntenyMS020397
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR001345 - Phosphoglycerate/bisphosphoglycerate mutase, active site
IPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]8.4e-2766.27Show/hide
Query:  YFQNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        +FQ +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +A
Subjt:  YFQNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]1.9e-39100Show/hide
Query:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
Subjt:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]2.1e-2567.09Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +A
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]2.1e-2567.09Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +A
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]2.1e-2567.09Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +A
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

TrEMBL top hitse value%identityAlignment
A0A6J1E0D8 B3 domain-containing protein At4g01580-like9.4e-40100Show/hide
Query:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
Subjt:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

A0A6J1EJ99 B3 domain-containing protein REM8-like isoform X24.4e-2156.47Show/hide
Query:  YFQNVPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSA
        +F+ +PKKFV  +G +A +N    +KVA+G EW+VGV KS+G+VWF+ GWQ+FVEFY++G+ YFL F+YE  ++CFHV IFDP+A
Subjt:  YFQNVPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSA

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like1.0e-2567.09Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +A
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like1.0e-2567.09Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +A
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

A0A6J1I9C1 B3 domain-containing protein REM8-like isoform X22.0e-2157.65Show/hide
Query:  YFQNVPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSA
        +F+ +PKKFV  +G +A +N    LKVA+G EW+VGV KS+G+VWF+ GWQ+FVEFY++G+ YFL F+YE  ++CFHV IFDP+A
Subjt:  YFQNVPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSA

SwissProt top hitse value%identityAlignment
Q6Z0D2 Putative B3 domain-containing protein Os08g03251001.7e-0639.47Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFD
        +PK+FV R    +  EE+ L+  N   + V V+KS  KV F  GW QFV+ + + +G  + FR++ N+ F V IFD
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFD

Q7XS75 Putative B3 domain-containing protein Os04g03469007.7e-0733.75Show/hide
Query:  VPKKFVSRH--GEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS
        +P KFV  +  GE L +    +    G  W+V ++K    V+   GW QF+ F+ I  G  + FRYE N  F +++F P+
Subjt:  VPKKFVSRH--GEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS

Q8L3W1 B3 domain-containing transcription factor VRN17.7e-1550Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS
        VP KFVS+  + L +  V L V +G  W+VG+ K++ K+WF+ GWQ+FV+ YSI +GY L FRYE N+ F V IF+ S
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS

Q9FJG2 B3 domain-containing protein At5g180008.5e-0632.47Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKS-NGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFD
        +P   +    +   + ++ L+V  G  W+V + K+ N     ++GW QFV    +G   +LTF +E N CF+VTIF+
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKS-NGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFD

Q9XIB4 B3 domain-containing protein At1g494752.0e-1043.04Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        VP +FV R G  L  + V L+   G +  + +++   +VWFEKGW +F E +S+  G+FL F YE ++CF V IFD SA
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein1.4e-1143.04Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA
        VP +FV R G  L  + V L+   G +  + +++   +VWFEKGW +F E +S+  G+FL F YE ++CF V IFD SA
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA

AT3G18990.1 AP2/B3-like transcriptional factor family protein5.5e-1650Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS
        VP KFVS+  + L +  V L V +G  W+VG+ K++ K+WF+ GWQ+FV+ YSI +GY L FRYE N+ F V IF+ S
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS

AT4G31640.1 transcriptional factor B3 family protein8.8e-0633.75Show/hide
Query:  VPKKFVSRHGEAL-QNEEVFLK-VANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS
        +P KF S+H E   +   V+L+   +   WKV +E         +GW++FVE + + VG F+ F+++ +  FHVT   PS
Subjt:  VPKKFVSRHGEAL-QNEEVFLK-VANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPS

AT5G18000.1 VERDANDI6.1e-0732.47Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKS-NGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFD
        +P   +    +   + ++ L+V  G  W+V + K+ N     ++GW QFV    +G   +LTF +E N CF+VTIF+
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKS-NGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFD

AT5G18090.1 AP2/B3-like transcriptional factor family protein6.7e-0630.77Show/hide
Query:  QNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFE-KGWQQFVEFYSIGVGYFLTFRYETNACFHVTIF
        + +P  F+    E   + ++ LKV+ G+ W + + ++    + E KGW QF+    +G   FLTF ++ N CF V I+
Subjt:  QNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFE-KGWQQFVEFYSIGVGYFLTFRYETNACFHVTIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTATTTTCAGAATGTTCCAAAGAAATTTGTTTCAAGACATGGGGAAGCTTTGCAAAATGAGGAGGTATTTCTGAAGGTGGCAAATGGGGCAGAGTGGAAAGTGGGAGT
GGAAAAAAGTAATGGAAAAGTTTGGTTTGAAAAAGGGTGGCAACAATTTGTGGAGTTTTATTCCATTGGAGTTGGCTACTTTTTAACATTCAGATATGAAACAAATGCTT
GCTTCCATGTTACAATATTTGATCCAAGTGCT
mRNA sequenceShow/hide mRNA sequence
ATTTATTTTCAGAATGTTCCAAAGAAATTTGTTTCAAGACATGGGGAAGCTTTGCAAAATGAGGAGGTATTTCTGAAGGTGGCAAATGGGGCAGAGTGGAAAGTGGGAGT
GGAAAAAAGTAATGGAAAAGTTTGGTTTGAAAAAGGGTGGCAACAATTTGTGGAGTTTTATTCCATTGGAGTTGGCTACTTTTTAACATTCAGATATGAAACAAATGCTT
GCTTCCATGTTACAATATTTGATCCAAGTGCT
Protein sequenceShow/hide protein sequence
IYFQNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSA