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MS020398 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020398
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationscaffold211:263238..263357
RNA-Seq ExpressionMS020398
SyntenyMS020398
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6205877.1 unnamed protein product [Miscanthus lutarioriparius]1.3e-0457.89Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYI
        L  GW +FARDN L+VGD+C+FE ++KN R++++KVYI
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYI

XP_016902162.1 PREDICTED: B3 domain-containing protein At3g18960-like [Cucumis melo]9.6e-0560Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        L S W++F +DN+L+VGD CVFEM+ K+S RIS KV IF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

XP_022158239.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]1.1e-13100Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

XP_024021327.1 B3 domain-containing transcription factor VRN1 [Morus notabilis]1.3e-0452.5Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        +G GW+ F+ DN+LQVGDVCVFE+++K    I L+V+I++
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

XP_038900379.1 B3 domain-containing transcription factor VRN1-like [Benincasa hispida]1.1e-0570.27Show/hide
Query:  GWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        GWK F RDN+L+VGD CVFEM+RKNSRRI  KV  F+
Subjt:  GWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

TrEMBL top hitse value%identityAlignment
A0A1S4E1R1 B3 domain-containing protein At3g18960-like4.7e-0560Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        L S W++F +DN+L+VGD CVFEM+ K+S RIS KV IF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

A0A6J1DYT9 B3 domain-containing transcription factor VRN1-like5.5e-14100Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

A0A6J1EJ99 B3 domain-containing protein REM8-like isoform X23.0e-0460Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        L SGW++F  DN L+V D CVFEM+RKNS  I+ KV IF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

A0A6J1EQN2 B3 domain-containing protein REM8-like isoform X13.0e-0460Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        L SGW++F  DN L+V D CVFEM+RKNS  I+ KV IF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

A5BWP2 Uncharacterized protein4.0e-0465Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        L SGW++FARDN LQVGDVCVFE++  NS    LKV IF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

SwissProt top hitse value%identityAlignment
Q2QMT6 B3 domain-containing protein LOC_Os12g400802.2e-0440Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        LG GW +F  DN +++GD+C+F++M KN +++ + V+I +
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

Q6AV21 B3 domain-containing protein Os03g06198005.0e-0444.74Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYI
        L +GW++FA DN L+VGD C+FE+ +K  ++++++V+I
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYI

Q851V5 Putative B3 domain-containing protein Os03g06216003.4e-0544.44Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKV
        L +GW RFA++N+LQVGD+C+FE+++K    +++ +
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKV

Q851W4 B3 domain-containing protein Os03g06205005.0e-0440.54Show/hide
Query:  GWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        GW+ F RDN LQ  D+C+F++ + + R +++KV+I +
Subjt:  GWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

Q8RYD1 B3 domain-containing protein REM169.1e-0647.5Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        + +GWK+F +DN+L+ GDVCVFE     ++ + L VYIF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ

Arabidopsis top hitse value%identityAlignment
AT4G33280.1 AP2/B3-like transcriptional factor family protein6.4e-0747.5Show/hide
Query:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ
        + +GWK+F +DN+L+ GDVCVFE     ++ + L VYIF+
Subjt:  LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGGAAGTGGTTGGAAGAGATTTGCTCGAGACAATAGCTTGCAAGTCGGCGATGTCTGCGTTTTTGAGATGATGAGAAAGAACAGTAGAAGAATCTCGCTCAAAGTTTA
CATTTTTCAA
mRNA sequenceShow/hide mRNA sequence
TTGGGAAGTGGTTGGAAGAGATTTGCTCGAGACAATAGCTTGCAAGTCGGCGATGTCTGCGTTTTTGAGATGATGAGAAAGAACAGTAGAAGAATCTCGCTCAAAGTTTA
CATTTTTCAA
Protein sequenceShow/hide protein sequence
LGSGWKRFARDNSLQVGDVCVFEMMRKNSRRISLKVYIFQ