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MS020399 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020399
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein
Genome locationscaffold211:264006..264272
RNA-Seq ExpressionMS020399
SyntenyMS020399
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045855.1 putative B3 domain-containing protein [Cucumis melo var. makuwa]2.1e-2363.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+  G+FLVF+YE+QSSS +VV+FD +ATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

XP_008457959.1 PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 [Cucumis melo]2.1e-2363.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+  G+FLVF+YE+QSSS +VV+FD +ATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

XP_016902156.1 PREDICTED: uncharacterized protein LOC103497524 isoform X1 [Cucumis melo]2.1e-2363.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+  G+FLVF+YE+QSSS +VV+FD +ATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

XP_022158239.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]1.5e-4298.88Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLG GHFLVFRYESQSSSFHVVVFDISATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

XP_038900379.1 B3 domain-containing transcription factor VRN1-like [Benincasa hispida]5.4e-2463.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY     +A ++++  LKVADG+EWN+GL KSN   RVWF  GWQ+F EFYSLGLG+FLVF+YE++SSSF+VV+FD++A EIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

TrEMBL top hitse value%identityAlignment
A0A1S3C7C6 putative B3 domain-containing protein Os03g0621600 isoform X21.0e-2363.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+  G+FLVF+YE+QSSS +VV+FD +ATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

A0A1S4E1Q2 uncharacterized protein LOC103497524 isoform X11.0e-2363.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+  G+FLVF+YE+QSSS +VV+FD +ATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

A0A5D3CPB8 Putative B3 domain-containing protein1.0e-2363.74Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+  G+FLVF+YE+QSSS +VV+FD +ATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

A0A6J1DYT9 B3 domain-containing transcription factor VRN1-like7.4e-4398.88Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLG GHFLVFRYESQSSSFHVVVFDISATEIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

A0A6J1I7N8 B3 domain-containing protein REM8-like isoform X17.2e-2260.67Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IPKKFV EY    ++A  ++   LKVADG EW +G+ KS+GRVWF  GWQKF EFY++GL +FLVF+YE +SS FHVV+FD +ATEI+Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

SwissProt top hitse value%identityAlignment
Q10GM3 B3 domain-containing protein Os03g06222004.8e-0733.33Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSN-GRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATE
        +P +F   +NG      +S ++ L+   G  W++G+A S+ G +    GW++F +   +  G  L+FRY   SSSF V++FD S  E
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSN-GRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATE

Q84R27 B3 domain-containing protein At3g189601.3e-0937.08Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP +FV+     L  + LS  + L+   G + ++ L +    +WF +GW +FAE +S+  GHFL+F Y+ ++SSF V++F++SA E +Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

Q8L3W1 B3 domain-containing transcription factor VRN11.4e-1441.57Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        +P KFV ++        LS  + L V DG  W +GL K++ ++WF DGWQ+F + YS+ +G+ L+FRYE  +S+F V +F++S +EI Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

Q9XIB4 B3 domain-containing protein At1g494753.6e-1040.45Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        +P +FVR          L+  + L+   G + ++ + +    VWF  GW +FAE +SL  GHFL F YE   S F VV+FD+SA+EIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

Q9ZSH7 B3 domain-containing protein At4g015801.1e-0837.08Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP +FV+     L  + LS  + L    G + ++ L +    +WF +GW +FAE +S+  GHFL+F Y+ ++SSF V++F+ SA E  Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein2.5e-1140.45Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        +P +FVR          L+  + L+   G + ++ + +    VWF  GW +FAE +SL  GHFL F YE   S F VV+FD+SA+EIEY
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

AT3G18960.1 AP2/B3-like transcriptional factor family protein9.6e-1137.08Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP +FV+     L  + LS  + L+   G + ++ L +    +WF +GW +FAE +S+  GHFL+F Y+ ++SSF V++F++SA E +Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

AT3G18990.1 AP2/B3-like transcriptional factor family protein9.9e-1641.57Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        +P KFV ++        LS  + L V DG  W +GL K++ ++WF DGWQ+F + YS+ +G+ L+FRYE  +S+F V +F++S +EI Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

AT4G01580.1 AP2/B3-like transcriptional factor family protein8.1e-1037.08Show/hide
Query:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY
        IP +FV+     L  + LS  + L    G + ++ L +    +WF +GW +FAE +S+  GHFL+F Y+ ++SSF V++F+ SA E  Y
Subjt:  IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCCAAAAAAGTTTGTGAGAGAATATAATGGCGTGCTCGTGCAAGCCTTGTTGAGCAGCAAAATGTGTCTTAAGGTTGCTGATGGCCGAGAGTGGAATTTGGGTTTGGC
CAAAAGTAATGGAAGGGTTTGGTTTTCTGATGGATGGCAAAAGTTTGCAGAGTTTTACTCTCTTGGACTCGGACACTTTCTAGTGTTTCGATATGAAAGTCAATCTTCCA
GCTTTCACGTCGTCGTCTTCGATATCAGTGCTACGGAAATCGAGTAT
mRNA sequenceShow/hide mRNA sequence
ATCCCAAAAAAGTTTGTGAGAGAATATAATGGCGTGCTCGTGCAAGCCTTGTTGAGCAGCAAAATGTGTCTTAAGGTTGCTGATGGCCGAGAGTGGAATTTGGGTTTGGC
CAAAAGTAATGGAAGGGTTTGGTTTTCTGATGGATGGCAAAAGTTTGCAGAGTTTTACTCTCTTGGACTCGGACACTTTCTAGTGTTTCGATATGAAAGTCAATCTTCCA
GCTTTCACGTCGTCGTCTTCGATATCAGTGCTACGGAAATCGAGTAT
Protein sequenceShow/hide protein sequence
IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY