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MS020400 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020400
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein
Genome locationscaffold211:271049..271348
RNA-Seq ExpressionMS020400
SyntenyMS020400
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457959.1 PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 [Cucumis melo]2.6e-2762.75Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG
        IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+    FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG

Query:  RV
        RV
Subjt:  RV

XP_016902156.1 PREDICTED: uncharacterized protein LOC103497524 isoform X1 [Cucumis melo]2.6e-2762.75Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG
        IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+    FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG

Query:  RV
        RV
Subjt:  RV

XP_022158239.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]5.0e-5099Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV
        IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNS MEIEYPVKRIRLDRADGRV
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV

XP_031737037.1 B3 domain-containing protein At4g01580-like [Cucumis sativus]9.1e-2868.27Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKV-ADGREWNVGLAKS-DG-RVWF-DDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRA
        IPTKFVREYGV+A  +++ CLKV ADGR+WNVGL KS DG RVWF D GWQ FVEFYS+GLE FL+F+YE + SSF VVIFD +A EIEYP+K I LD A
Subjt:  IPTKFVREYGVQALLSSKTCLKV-ADGREWNVGLAKS-DG-RVWF-DDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRA

Query:  DGRV
        + +V
Subjt:  DGRV

XP_038900379.1 B3 domain-containing transcription factor VRN1-like [Benincasa hispida]2.8e-2963.73Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG
        IP KFVREYG +A ++++T LKVADG+EWN+GL KS+   RVWF  GWQ+FVEFYS+GL  FL+F+YE + SSF VVIFD +AMEIEYPVK IRLD+ + 
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG

Query:  RV
        ++
Subjt:  RV

TrEMBL top hitse value%identityAlignment
A0A1S3C7C6 putative B3 domain-containing protein Os03g0621600 isoform X21.3e-2762.75Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG
        IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+    FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG

Query:  RV
        RV
Subjt:  RV

A0A1S4E1Q2 uncharacterized protein LOC103497524 isoform X11.3e-2762.75Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG
        IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+    FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG

Query:  RV
        RV
Subjt:  RV

A0A5D3CPB8 Putative B3 domain-containing protein1.3e-2762.75Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG
        IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+    FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADG

Query:  RV
        RV
Subjt:  RV

A0A6J1DYT9 B3 domain-containing transcription factor VRN1-like2.4e-5099Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV
        IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNS MEIEYPVKRIRLDRADGRV
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV

A0A6J1I7N8 B3 domain-containing protein REM8-like isoform X18.3e-2765.56Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKR
        IP KFV EYG++A  ++ T LKVADG EW VG+ KSDGRVWFD GWQKFVEFY++GLE FL+F+YE + S F VVIFD +A EI+YP+K+
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKR

SwissProt top hitse value%identityAlignment
Q10GM3 B3 domain-containing protein Os03g06222003.2e-0735.23Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSD-GRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYP
        +P +F   +     +S +  L+   G  W++G+A SD G +    GW++FV+   I   D L+FRY    SSF V+IFD S  E   P
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSD-GRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYP

Q84R27 B3 domain-containing protein At3g189608.9e-1036.08Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRAD
        IP +FV+  G  + LS    L+   G + ++ L +    +WF +GW +F E +SI    FL+F Y ++ SSFRV+IF+ SA E +YP+  + +  +D
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRAD

Q8L3W1 B3 domain-containing transcription factor VRN14.6e-1447.67Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEY
        +P KFV ++  +  LS    L V DG  W VGL K+D ++WF DGWQ+FV+ YSI +   L+FRYE   S+F V IF+ S  EI Y
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEY

Q9XIB4 B3 domain-containing protein At1g494751.2e-0940.91Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPV
        +P +FVR +G +  L+    L+   G + ++ + +    VWF+ GW +F E +S+    FL F YE   S FRVVIFD SA EIEYP+
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPV

Q9ZSH7 B3 domain-containing protein At4g015804.0e-1037Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV
        IP +FV+  G  + LS    L    G + ++ L +    +WF +GW +F E +SI    FL+F Y +K SSFRV+IF+ SA E  YP+  + +  +D  V
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein8.2e-1140.91Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPV
        +P +FVR +G +  L+    L+   G + ++ + +    VWF+ GW +F E +S+    FL F YE   S FRVVIFD SA EIEYP+
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPV

AT3G18960.1 AP2/B3-like transcriptional factor family protein6.3e-1136.08Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRAD
        IP +FV+  G  + LS    L+   G + ++ L +    +WF +GW +F E +SI    FL+F Y ++ SSFRV+IF+ SA E +YP+  + +  +D
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRAD

AT3G18990.1 AP2/B3-like transcriptional factor family protein3.2e-1547.67Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEY
        +P KFV ++  +  LS    L V DG  W VGL K+D ++WF DGWQ+FV+ YSI +   L+FRYE   S+F V IF+ S  EI Y
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEY

AT4G01580.1 AP2/B3-like transcriptional factor family protein2.8e-1137Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV
        IP +FV+  G  + LS    L    G + ++ L +    +WF +GW +F E +SI    FL+F Y +K SSFRV+IF+ SA E  YP+  + +  +D  V
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV

AT4G33280.1 AP2/B3-like transcriptional factor family protein5.7e-0432.53Show/hide
Query:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVW-FDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAM
        IP KF      +  L     LK   G  +NVG+ + D +   F  GW KFV+ +S+   D L+F++    S F V++FD   +
Subjt:  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVW-FDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCCAACAAAATTTGTGAGAGAATATGGGGTGCAAGCCTTGTTAAGCAGCAAAACGTGTCTTAAGGTGGCCGATGGCCGAGAGTGGAATGTGGGTTTGGCCAAAAGTGA
TGGAAGGGTCTGGTTTGATGATGGGTGGCAGAAGTTTGTAGAGTTTTACTCCATTGGATTGGAAGACTTTCTAATGTTTCGATACGAAAGGAAACCTTCGAGCTTTCGTG
TCGTCATCTTCGATAACAGCGCTATGGAAATCGAGTATCCTGTGAAGAGAATTCGTCTTGATAGAGCTGATGGAAGGGTG
mRNA sequenceShow/hide mRNA sequence
ATCCCAACAAAATTTGTGAGAGAATATGGGGTGCAAGCCTTGTTAAGCAGCAAAACGTGTCTTAAGGTGGCCGATGGCCGAGAGTGGAATGTGGGTTTGGCCAAAAGTGA
TGGAAGGGTCTGGTTTGATGATGGGTGGCAGAAGTTTGTAGAGTTTTACTCCATTGGATTGGAAGACTTTCTAATGTTTCGATACGAAAGGAAACCTTCGAGCTTTCGTG
TCGTCATCTTCGATAACAGCGCTATGGAAATCGAGTATCCTGTGAAGAGAATTCGTCTTGATAGAGCTGATGGAAGGGTG
Protein sequenceShow/hide protein sequence
IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV