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MS020403 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020403
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein At4g01580-like
Genome locationscaffold211:278074..278376
RNA-Seq ExpressionMS020403
SyntenyMS020403
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-2964.52Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]4.5e-51100Show/hide
Query:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEF
        NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEF
Subjt:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEF

Query:  E
        E
Subjt:  E

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]3.7e-2964.52Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]3.7e-2964.52Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]3.7e-2964.52Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR

TrEMBL top hitse value%identityAlignment
A0A6J1E0D8 B3 domain-containing protein At4g01580-like2.2e-51100Show/hide
Query:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEF
        NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEF
Subjt:  NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEF

Query:  E
        E
Subjt:  E

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like1.8e-2964.52Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like1.8e-2964.52Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR
        +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIR

A0A6J1I7N8 B3 domain-containing protein REM8-like isoform X14.3e-2358.43Show/hide
Query:  VPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSASEIEYPME
        +PKKFV  +G +A +N    LKVA+G EW+VGV KS+G+VWF+ GWQ+FVEFY++G+ YFL F+YE  ++CFHV IFDP+A+EI+YP++
Subjt:  VPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSASEIEYPME

A0A6J1I9C1 B3 domain-containing protein REM8-like isoform X24.3e-2358.43Show/hide
Query:  VPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSASEIEYPME
        +PKKFV  +G +A +N    LKVA+G EW+VGV KS+G+VWF+ GWQ+FVEFY++G+ YFL F+YE  ++CFHV IFDP+A+EI+YP++
Subjt:  VPKKFVSRHG-EALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYE-TNACFHVTIFDPSASEIEYPME

SwissProt top hitse value%identityAlignment
Q7XS75 Putative B3 domain-containing protein Os04g03469001.2e-0628.43Show/hide
Query:  VPKKFVSRH--GEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE
        +P KFV  +  GE L +    +    G  W+V ++K    V+   GW QF+ F+ I  G  + FRYE N  F +++F P+  + ++  +     +   E+
Subjt:  VPKKFVSRH--GEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE

Query:  FE
         E
Subjt:  FE

Q8H2D1 B3 domain-containing protein REM81.9e-0734.95Show/hide
Query:  NVPKKFVSRHGEAL-QNEEVFLKV-ANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESE
        N+P KF S H E   + E V L+  A+   W+V ++ +       +GW++FVE + + +  F+ FR+E +  FHVT   PS  EI+YP     +   ES 
Subjt:  NVPKKFVSRHGEAL-QNEEVFLKV-ANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESE

Query:  EFE
        E E
Subjt:  EFE

Q8L3W1 B3 domain-containing transcription factor VRN11.7e-1651.19Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEY
        VP KFVS+  + L +  V L V +G  W+VG+ K++ K+WF+ GWQ+FV+ YSI +GY L FRYE N+ F V IF+ S SEI Y
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEY

Q9SB80 B3 domain-containing protein REM57.1e-0733Show/hide
Query:  VPKKFVSRHGEAL-QNEEVFLK-VANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE
        +P KF S+H E   +   V+L+   +   WKV +E         +GW++FVE + + VG F+ F+++ +  FHVT   PS  E++Y      D   ES+E
Subjt:  VPKKFVSRHGEAL-QNEEVFLK-VANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE

Q9XIB4 B3 domain-containing protein At1g494756.4e-1646.32Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSE
        VP +FV R G  L  + V L+   G +  + +++   +VWFEKGW +F E +S+  G+FL F YE ++CF V IFD SASEIEYP++D  D R E
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSE

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein4.6e-1746.32Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSE
        VP +FV R G  L  + V L+   G +  + +++   +VWFEKGW +F E +S+  G+FL F YE ++CF V IFD SASEIEYP++D  D R E
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSE

AT3G18990.1 AP2/B3-like transcriptional factor family protein1.2e-1751.19Show/hide
Query:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEY
        VP KFVS+  + L +  V L V +G  W+VG+ K++ K+WF+ GWQ+FV+ YSI +GY L FRYE N+ F V IF+ S SEI Y
Subjt:  VPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEY

AT4G31640.1 transcriptional factor B3 family protein5.1e-0833Show/hide
Query:  VPKKFVSRHGEAL-QNEEVFLK-VANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE
        +P KF S+H E   +   V+L+   +   WKV +E         +GW++FVE + + VG F+ F+++ +  FHVT   PS  E++Y      D   ES+E
Subjt:  VPKKFVSRHGEAL-QNEEVFLK-VANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE

AT4G31680.1 Transcriptional factor B3 family protein1.3e-0834.95Show/hide
Query:  NVPKKFVSRHGEAL-QNEEVFLKV-ANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESE
        N+P KF S H E   + E V L+  A+   W+V ++ +       +GW++FVE + + +  F+ FR+E +  FHVT   PS  EI+YP     +   ES 
Subjt:  NVPKKFVSRHGEAL-QNEEVFLKV-ANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESE

Query:  EFE
        E E
Subjt:  EFE

AT4G31690.1 Transcriptional factor B3 family protein1.1e-0733.33Show/hide
Query:  VPKKFVSRHGEAL-QNEEVFLKV-ANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE
        +P  + S H E   + + V L+  A+   W+V +E         +GW++FVE + + +G F+ FR+E +  FHVT   PS  EI+YP     +   ES E
Subjt:  VPKKFVSRHGEAL-QNEEVFLKV-ANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE

Query:  FE
         E
Subjt:  FE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGTTCCAAAGAAATTTGTTTCAAGACATGGGGAAGCTTTGCAAAATGAGGAGGTATTTCTGAAGGTGGCAAATGGGGCAGAGTGGAAAGTGGGAGTGGAAAAAAGTAA
TGGAAAAGTTTGGTTTGAAAAAGGGTGGCAACAATTTGTGGAGTTTTATTCCATTGGAGTTGGCTACTTTTTAACATTCAGATATGAAACAAATGCTTGCTTCCATGTTA
CAATATTTGATCCAAGTGCTTCAGAGATTGAATATCCAATGGAAGATTTTGGGGATATTAGAAGTGAGAGTGAAGAATTTGAA
mRNA sequenceShow/hide mRNA sequence
AATGTTCCAAAGAAATTTGTTTCAAGACATGGGGAAGCTTTGCAAAATGAGGAGGTATTTCTGAAGGTGGCAAATGGGGCAGAGTGGAAAGTGGGAGTGGAAAAAAGTAA
TGGAAAAGTTTGGTTTGAAAAAGGGTGGCAACAATTTGTGGAGTTTTATTCCATTGGAGTTGGCTACTTTTTAACATTCAGATATGAAACAAATGCTTGCTTCCATGTTA
CAATATTTGATCCAAGTGCTTCAGAGATTGAATATCCAATGGAAGATTTTGGGGATATTAGAAGTGAGAGTGAAGAATTTGAA
Protein sequenceShow/hide protein sequence
NVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGKVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEEFE