; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020421 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020421
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationscaffold211:566288..574764
RNA-Seq ExpressionMS020421
SyntenyMS020421
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR014876 - DEK, C-terminal
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155470.1 upstream activation factor subunit spp27-like isoform X1 [Momordica charantia]3.6e-16997.64Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
        MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEA     AEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK

Query:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
        GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
Subjt:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND

Query:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
        VIPAKSSQKEQPKEKPQKKRQKQGKEE PKKKRQKQAK EDSDE AREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
Subjt:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD

Query:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
Subjt:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

XP_022155471.1 upstream activation factor subunit spp27-like isoform X2 [Momordica charantia]3.6e-16997.64Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
        MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEA     AEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK

Query:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
        GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
Subjt:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND

Query:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
        VIPAKSSQKEQPKEKPQKKRQKQGKEE PKKKRQKQAK EDSDE AREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
Subjt:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD

Query:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
Subjt:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

XP_022928098.1 upstream activation factor subunit UAF30-like [Cucurbita moschata]1.8e-13983.67Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD
        MVSDSELI RLREFLR+SDLN TTT IVRR LEE F VDL DKK FIREQVDLFL+TEHE  EE+G    EEADQEDGD NLKTEEEDGDSEDG+NDD D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD

Query:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE
        DEKGKT SNKL+K  K+ GGGFSKLCSLSPQLQEF GVPEMARTEVVKQLW HIR NNLQDPSNRRNI+CDE LKALF V+SINMFQMNKALSKHIWPLE
Subjt:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SNDVIPAKSSQKE-QPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN
        SNDVIPAKSSQKE Q KEK +K++Q    +EKP+KKRQKQ KEEDSD+ AREEK+QKKGKSGFLAPL LSDALVTF GTGE ALSR++VVKRMWDYIKQN
Subjt:  SNDVIPAKSSQKE-QPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN

Query:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        NLQDPSDKRR+ICDEKLKELFDVESFHGFTVSKLLA HFVKTK
Subjt:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

XP_023512445.1 upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo]1.3e-13983.67Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD
        MVSDSELI RLREFLR+SDLN TTT IVRR LEE F VDL DKK FIREQVDLFL+TEHE  EE+G    EEADQEDGD NLKTEEEDGDSEDG+NDD D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD

Query:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE
        DEKGKT SNKL+K  K+ GGGFSKLCSLSPQLQEF GVPEMARTEVVKQLW HIR NNLQDPSNRRNI+CDE LKALF V+SINMFQMNKALSKHIWPLE
Subjt:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SNDVIPAKSSQKE-QPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN
        SNDVIPAKSSQKE Q KEK +K++Q    +EKP+KKRQKQ KEEDSD+ AREEK+QKKGKSGFLAPL LSDALVTF GTGE ALSR++VVKRMWDYIKQN
Subjt:  SNDVIPAKSSQKE-QPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN

Query:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        NLQDPSDKRR+ICDEKLKELFDVESFHGFTVSKLLA HFVKTK
Subjt:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

XP_038901460.1 upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida]3.0e-13982.22Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD
        MVSDSELIGRLREFLRNSDLNTTTT IVRR LEE+F +DL DKK FIREQVD+FL+TEHE A E+G    EE DQE GD NLKTEE+DGDSEDG+NDD+D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD

Query:  DEKGKTSSNKLSKEVKKR-GGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPL
        DEKGK  SNKLSKE KKR GGGFSKLCSLSPQLQEF G PEMARTEVVKQLW HIR  NLQDPSNRRNI+CD+ LKALFGVNSINMFQMNKALSKHIWPL
Subjt:  DEKGKTSSNKLSKEVKKR-GGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN
        ESNDVIPA SSQ    KEK QK++Q    +EKP+KKRQKQ KEEDSD+ AREEK+QKKGKSGFLAPL LSDALVTF GTGEDAL R++VVKRMWDYIKQN
Subjt:  ESNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN

Query:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        NLQDPSDKRRIICDE+LKELFDV+SFHGFTVSKLLA HF+KTK
Subjt:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

TrEMBL top hitse value%identityAlignment
A0A0A0LJW7 Uncharacterized protein2.7e-13881.29Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD
        MVSDSELI RLR+FLRNSDLNTTTT IVRR LEE+F +DL DKKLFIREQVDLFL+TEHE A ++G    EE  QEDGD NLK E EDGDSEDG+ND++D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD

Query:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE
        DEKGKTSS K    VKKRGGGF+KLCSLSPQLQEF G PEMARTEVVKQLW HIRENNLQDPSNRRNI+CDEPLKALFGVNSINMFQMNKALSKHIWPLE
Subjt:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNN
        SNDVIPAKSSQ    KEKPQK++Q    +EKP+KKRQKQ KEEDSD+ ARE+K+QKKGKSGFLAPLPLS+ALV F GTGEDAL R++VVKRMWDYIKQNN
Subjt:  SNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNN

Query:  LQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        LQDPSDKRRIICDE+LKELFDV+SF+GFTVSKLLA HF+K K
Subjt:  LQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

A0A1S3C766 upstream activation factor subunit UAF30-like2.7e-13881.58Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD
        MVSDSELIGRLR+FLRNSDLNTTTT IVRR LEE+F +DL DKK FIREQVDLFL+TEHE A E+G    EE +QEDGD NLK E EDGDSEDG+NDD+D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD

Query:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE
        DEKGKTSS+K     KKRGGGFSKLCSLSPQLQEF G  EMARTEVVKQLW HIRENNLQDPSNRRNI+CDEPLKALFGVNSINMFQMNKALSKHIWPLE
Subjt:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNN
        SNDVIPAKSSQ    KEK QK++Q    +EKP+KKRQKQ KEEDSD+ ARE+K+QKKGKSGFLAPLPLSDALV F GTGEDAL R++VVKRMWDYIKQNN
Subjt:  SNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNN

Query:  LQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        LQDPSDKRRIICDE+LKELFDV+SF+GFTVSKLLA HF+K K
Subjt:  LQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

A0A6J1DMI3 upstream activation factor subunit spp27-like isoform X11.8e-16997.64Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
        MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEA     AEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK

Query:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
        GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
Subjt:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND

Query:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
        VIPAKSSQKEQPKEKPQKKRQKQGKEE PKKKRQKQAK EDSDE AREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
Subjt:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD

Query:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
Subjt:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

A0A6J1DPF6 upstream activation factor subunit spp27-like isoform X21.8e-16997.64Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
        MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEA     AEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK

Query:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
        GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
Subjt:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND

Query:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
        VIPAKSSQKEQPKEKPQKKRQKQGKEE PKKKRQKQAK EDSDE AREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD
Subjt:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQD

Query:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
Subjt:  PSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

A0A6J1EMX5 upstream activation factor subunit UAF30-like8.5e-14083.67Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD
        MVSDSELI RLREFLR+SDLN TTT IVRR LEE F VDL DKK FIREQVDLFL+TEHE  EE+G    EEADQEDGD NLKTEEEDGDSEDG+NDD D
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDG---AEEADQEDGDGNLKTEEEDGDSEDGENDDDD

Query:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE
        DEKGKT SNKL+K  K+ GGGFSKLCSLSPQLQEF GVPEMARTEVVKQLW HIR NNLQDPSNRRNI+CDE LKALF V+SINMFQMNKALSKHIWPLE
Subjt:  DEKGKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLE

Query:  SNDVIPAKSSQKE-QPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN
        SNDVIPAKSSQKE Q KEK +K++Q    +EKP+KKRQKQ KEEDSD+ AREEK+QKKGKSGFLAPL LSDALVTF GTGE ALSR++VVKRMWDYIKQN
Subjt:  SNDVIPAKSSQKE-QPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN

Query:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
        NLQDPSDKRR+ICDEKLKELFDVESFHGFTVSKLLA HFVKTK
Subjt:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp279.7e-0828.44Show/hide
Query:  LREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQV-DLFLRTEHEAAEEDGAEEADQEDGDGNLKTEE--EDGD---SEDGENDDDDDEKGKTS
        +++ L   D  T +   VR++LEE   VDL   K  +   +   F  T   + +E   ++A      G   TE   E+G        +  +D +E GK  
Subjt:  LREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQV-DLFLRTEHEAAEEDGAEEADQEDGDGNLKTEE--EDGD---SEDGENDDDDDEKGKTS

Query:  SNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPA
         N+            +K   LSP+L EF G+ +++R + VK+LW +I+ ++LQDP+++R I+CD+ LK++F V++++MF MNK L+  +  +  +D +P 
Subjt:  SNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPA

Query:  KSSQKEQPKEKPQKKRQKQGKEEKP
           + E+P       +Q++ +  +P
Subjt:  KSSQKEQPKEKPQKKRQKQGKEEKP

Q05024 Protein TRI12.6e-1338.02Show/hide
Query:  KGKTSSNKLSKEVKKRGGGFSKLCS-----LSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIW
        KGK S +K  ++ KK     S   S     LS  LQ+F G  E+ RT+VVK +W +I+E++LQ+P +RR I+CDE ++ +FG   + MF MNK L+KH++
Subjt:  KGKTSSNKLSKEVKKRGGGFSKLCS-----LSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIW

Query:  PLESNDVIPAKSSQKEQPKEK
            ++++  +  QK+ P+++
Subjt:  PLESNDVIPAKSSQKEQPKEK

Q08747 Upstream activation factor subunit UAF306.7e-0930.43Show/hide
Query:  LRNSDLNTTTTTIVRRMLEEEFNVDLLDK----KLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEKGKTSSNKLSK
        L + DL T TT  VR  L+E + +D+  +       IR+ +DL    +     E   E+  +E+    ++  +E   S+    ++ +D + K +  +  K
Subjt:  LRNSDLNTTTTTIVRRMLEEEFNVDLLDK----KLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEKGKTSSNKLSK

Query:  EVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIW-PLESNDVIPAKSSQK
            +    ++  +LS  L    G  E+ RTEVV++LW +I+ +NLQ+P+N++ I+CDE L+ + G  S NMF+M+K L+ H+  P + +D  P    Q+
Subjt:  EVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIW-PLESNDVIPAKSSQK

Query:  EQPKEKP
         + KEKP
Subjt:  EQPKEKP

Arabidopsis top hitse value%identityAlignment
AT1G49520.1 SWIB complex BAF60b domain-containing protein7.2e-6747.97Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
        MVSDS+L+ +LRE LR+SDL TTT   VRR LE  F V+L DKK F+REQ+D FL ++   A  +   E ++ED +G      +  D E  ENDDD  E 
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK

Query:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND
               L  + KKRGGGF+K+C LSPQL++F G  ++ARTEVVK++W +IRE++LQDP+NRRNI+CDE L +LF V +INMFQMNKAL+KHIW L   D
Subjt:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESND

Query:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEED----------SDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMW
            K+ ++E   E   ++ +K  K E+  +  +++++EE+            +PA+ E++ KK   GF     LS  L  F GT +  L+R EVVK +W
Subjt:  VIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEED----------SDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMW

Query:  DYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPH
         YIK+NNLQDPSDKR IICDE L+ LF VES + F ++K LA H
Subjt:  DYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPH

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.9e-1446.99Show/hide
Query:  SGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGF-TVSKLLAPHFVKT
        +G L  +P+S  L  F   GE+ +SR   VK++W+YIK NNLQ+P +KR I+CDE+LK +F  +   GF  +SKLL+ HF K+
Subjt:  SGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGF-TVSKLLAPHFVKT

AT3G19080.1 SWIB complex BAF60b domain-containing protein9.8e-6438.12Show/hide
Query:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK
        MVSD +L+ RLRE L +SDLNT T   VRR LE +F VDL DKK +IR+Q+D FL +     ++  + + ++      +K E E GD ED + D    E+
Subjt:  MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEK

Query:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPL----
         K    +   + KKRGGG +K+  LSPQL++  G  ++ RTEVVK++W +IRE +LQDP +RR I+CDE L +LF V +INMFQMNKAL+KHIWPL    
Subjt:  GKTSSNKLSKEVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPL----

Query:  ------------ESNDVIPAKSSQKEQPKEKPQ-------------KKRQKQGKE-EKPKKK--------------------------------------
                    E+++    K  Q E+ +E  +             +KR+K  K  EKPK+K                                      
Subjt:  ------------ESNDVIPAKSSQKEQPKEKPQ-------------KKRQKQGKE-EKPKKK--------------------------------------

Query:  ------------------------------------------------------------RQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTF
                                                                    +QK   + DS+EP  ++K+QKK     LAPLPLSDALV F
Subjt:  ------------------------------------------------------------RQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTF

Query:  FGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK
         G GE++LSRA+VVKR+W+YI  N+LQDPSDKRR+ICDEKLKELF+V+SF   +VSKLL  HF+K +
Subjt:  FGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVKTK

AT4G22360.1 SWIB complex BAF60b domain-containing protein9.2e-3836.93Show/hide
Query:  SSNKLSKE-----VKKRG--GGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPL
        S N+  KE      K++G  GG +K+C +SP+L+   G P + RTE+V+QLW +IR+NNLQDPSN+R IICD+ L+ +F  +  +MF+MNK L+KHI PL
Subjt:  SSNKLSKE-----VKKRG--GGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPL

Query:  ESNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN
        +     P+K S                            QAK+  ++   + E  +    +   + + LS+ L  FFGTGE  ++  E+++R+W+YIK N
Subjt:  ESNDVIPAKSSQKEQPKEKPQKKRQKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQN

Query:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVK
        NL+DP +   I CDEKL++L   ES     ++++L  H  K
Subjt:  NLQDPSDKRRIICDEKLKELFDVESFHGFTVSKLLAPHFVK

AT4G34290.1 SWIB/MDM2 domain superfamily protein7.9e-1339.58Show/hide
Query:  SDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGF-TVSKLLAPHFV
        S +P    K ++    G + P P+S A+    G  E  + R + +KR+W YIK+++LQDP +KR I+CDEKLK++F+ +   GF  ++KL+ PHF+
Subjt:  SDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGF-TVSKLLAPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCAGACTCGGAGCTCATCGGTCGGCTCCGGGAGTTTCTTAGGAATTCCGACCTCAATACCACCACCACTACTATCGTCCGCCGAATGCTCGAGGAGGAATTCAA
CGTTGATTTGCTCGATAAGAAGCTGTTTATTAGGGAACAGGTGGACTTGTTCCTCCGGACTGAGCACGAGGCGGCCGAGGAAGATGGCGCCGAGGAAGCTGACCAGGAGG
ATGGAGACGGAAATTTGAAGACGGAAGAAGAGGATGGAGATAGTGAAGACGGAGAAAACGACGACGACGATGATGAAAAGGGTAAAACCAGTTCTAACAAGCTTAGTAAA
GAGGTGAAGAAACGAGGTGGTGGTTTTAGCAAGCTGTGTAGCCTTTCCCCACAACTGCAGGAATTTACAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACT
ATGGATCCACATTAGAGAGAATAATTTGCAAGACCCCAGTAATAGGAGAAATATTATCTGTGATGAACCATTGAAAGCACTCTTTGGTGTTAATTCCATCAACATGTTTC
AAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAATGACGTTATTCCAGCCAAATCAAGTCAGAAGGAGCAGCCAAAGGAGAAGCCCCAGAAGAAGCGG
CAAAAGCAAGGAAAGGAAGAGAAGCCAAAGAAGAAGCGGCAAAAGCAAGCGAAGGAAGAAGACTCAGATGAGCCTGCAAGAGAGGAAAAGCAGCAAAAGAAAGGGAAATC
AGGTTTTCTTGCTCCGCTTCCACTTTCGGATGCTCTGGTGACCTTTTTTGGTACAGGAGAAGATGCGTTATCTCGCGCTGAAGTTGTGAAAAGAATGTGGGATTACATAA
AGCAAAACAACCTTCAGGACCCTTCTGACAAAAGGAGAATAATCTGTGATGAGAAGCTAAAGGAACTCTTTGATGTCGAGTCATTCCACGGCTTCACTGTTTCGAAACTC
CTGGCCCCTCATTTTGTAAAGACAAAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCAGACTCGGAGCTCATCGGTCGGCTCCGGGAGTTTCTTAGGAATTCCGACCTCAATACCACCACCACTACTATCGTCCGCCGAATGCTCGAGGAGGAATTCAA
CGTTGATTTGCTCGATAAGAAGCTGTTTATTAGGGAACAGGTGGACTTGTTCCTCCGGACTGAGCACGAGGCGGCCGAGGAAGATGGCGCCGAGGAAGCTGACCAGGAGG
ATGGAGACGGAAATTTGAAGACGGAAGAAGAGGATGGAGATAGTGAAGACGGAGAAAACGACGACGACGATGATGAAAAGGGTAAAACCAGTTCTAACAAGCTTAGTAAA
GAGGTGAAGAAACGAGGTGGTGGTTTTAGCAAGCTGTGTAGCCTTTCCCCACAACTGCAGGAATTTACAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACT
ATGGATCCACATTAGAGAGAATAATTTGCAAGACCCCAGTAATAGGAGAAATATTATCTGTGATGAACCATTGAAAGCACTCTTTGGTGTTAATTCCATCAACATGTTTC
AAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAATGACGTTATTCCAGCCAAATCAAGTCAGAAGGAGCAGCCAAAGGAGAAGCCCCAGAAGAAGCGG
CAAAAGCAAGGAAAGGAAGAGAAGCCAAAGAAGAAGCGGCAAAAGCAAGCGAAGGAAGAAGACTCAGATGAGCCTGCAAGAGAGGAAAAGCAGCAAAAGAAAGGGAAATC
AGGTTTTCTTGCTCCGCTTCCACTTTCGGATGCTCTGGTGACCTTTTTTGGTACAGGAGAAGATGCGTTATCTCGCGCTGAAGTTGTGAAAAGAATGTGGGATTACATAA
AGCAAAACAACCTTCAGGACCCTTCTGACAAAAGGAGAATAATCTGTGATGAGAAGCTAAAGGAACTCTTTGATGTCGAGTCATTCCACGGCTTCACTGTTTCGAAACTC
CTGGCCCCTCATTTTGTAAAGACAAAA
Protein sequenceShow/hide protein sequence
MVSDSELIGRLREFLRNSDLNTTTTTIVRRMLEEEFNVDLLDKKLFIREQVDLFLRTEHEAAEEDGAEEADQEDGDGNLKTEEEDGDSEDGENDDDDDEKGKTSSNKLSK
EVKKRGGGFSKLCSLSPQLQEFTGVPEMARTEVVKQLWIHIRENNLQDPSNRRNIICDEPLKALFGVNSINMFQMNKALSKHIWPLESNDVIPAKSSQKEQPKEKPQKKR
QKQGKEEKPKKKRQKQAKEEDSDEPAREEKQQKKGKSGFLAPLPLSDALVTFFGTGEDALSRAEVVKRMWDYIKQNNLQDPSDKRRIICDEKLKELFDVESFHGFTVSKL
LAPHFVKTK