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MS020426 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020426
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold211:627380..627613
RNA-Seq ExpressionMS020426
SyntenyMS020426
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]2.0e-2273.68Show/hide
Query:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV
        NL L ILRSYKLFDYLTGDK CPP HLVP D P N EGST SQ SPTLNP Y+  + VD+LLLGWLYNSM A+VA+
Subjt:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV

XP_030477943.1 uncharacterized protein LOC115694979 [Cannabis sativa]3.8e-0541.67Show/hide
Query:  SILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV
        +I+R ++L  ++ G + CPP  L+P      A  ST   P+ TLNP Y+  +  DQLL+GW+Y+SMT +VA+
Subjt:  SILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]1.4e-0442.67Show/hide
Query:  LGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV
        L L IL+SYKL  +LT +  CPP  ++          S+ S  + T+NP +   V  D LLLGW+YNSMT  VA+
Subjt:  LGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV

XP_038887015.1 uncharacterized protein LOC120077182 [Benincasa hispida]2.9e-0548.19Show/hide
Query:  LGLSILRSYKLFDYLTGDKSCPPMHLVPI-------DMPINAEGSTLSQPSP-TLNPAYKVAV--DQLLLGWLYNSMTANVAV
        L L ILR YKL  +L+G K C PM  V         D    A G   S     T NP Y+V V  DQLLLGW YNSMT  VAV
Subjt:  LGLSILRSYKLFDYLTGDKSCPPMHLVPI-------DMPINAEGSTLSQPSP-TLNPAYKVAV--DQLLLGWLYNSMTANVAV

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]5.8e-0642.57Show/hide
Query:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDM------PINAEG-----------------STLSQPSPTL--NPAY--KVAVDQLLLGWLYNSMTANVA
        NL L ILRSY+L  +LTG+  CPP   V  D       P +  G                 +T S  SP L  NP Y  +  VDQLLLGWLYN MTA VA
Subjt:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDM------PINAEG-----------------STLSQPSPTL--NPAY--KVAVDQLLLGWLYNSMTANVA

Query:  V
        +
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911163.5e-0437.65Show/hide
Query:  LGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSP----------TLNPAYK--VAVDQLLLGWLYNSMTANVAV
        L L IL+SYKL  +L G+  C P  ++    P  +      +PS           T+NP Y+  +  D LLLGWLYNSMT  V +
Subjt:  LGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSP----------TLNPAYK--VAVDQLLLGWLYNSMTANVAV

A0A2Z7C038 Uncharacterized protein9.1e-0544.44Show/hide
Query:  LSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVA
        L I+R +KL  Y+ G K CPP  L     P    GST+  P    NP Y+  ++ DQLLLGWLYN+M++++A
Subjt:  LSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVA

A0A5A7VPY0 Uncharacterized protein3.5e-0437.65Show/hide
Query:  LGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSP----------TLNPAYK--VAVDQLLLGWLYNSMTANVAV
        L L IL+SYKL  +L G+  C P  ++    P  +      +PS           T+NP Y+  +  D LLLGWLYNSMT  V +
Subjt:  LGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSP----------TLNPAYK--VAVDQLLLGWLYNSMTANVAV

A0A5C7GVK1 Uncharacterized protein4.5e-0441.33Show/hide
Query:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVA
        NL L ++R  ++  Y+TG K CPP  ++  D+   A+  TL +     NP Y+  +  DQ+LLGWLYNSM  +VA
Subjt:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVA

A0A6J1DCW4 uncharacterized protein LOC1110195989.7e-2373.68Show/hide
Query:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV
        NL L ILRSYKLFDYLTGDK CPP HLVP D P N EGST SQ SPTLNP Y+  + VD+LLLGWLYNSM A+VA+
Subjt:  NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYK--VAVDQLLLGWLYNSMTANVAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATTTGGGCTTATCGATCTTGCGAAGCTACAAGCTATTTGACTACCTAACAGGAGATAAGTCATGCCCTCCCATGCATCTTGTTCCAATAGACATGCCTATTAATGCAGA
AGGCAGTACCTTGTCACAACCTTCCCCCACTTTAAACCCCGCGTACAAGGTCGCAGTAGATCAATTACTATTGGGTTGGCTTTATAACTCGATGACAGCGAACGTAGCTG
TTGCGTCCACACAA
mRNA sequenceShow/hide mRNA sequence
AATTTGGGCTTATCGATCTTGCGAAGCTACAAGCTATTTGACTACCTAACAGGAGATAAGTCATGCCCTCCCATGCATCTTGTTCCAATAGACATGCCTATTAATGCAGA
AGGCAGTACCTTGTCACAACCTTCCCCCACTTTAAACCCCGCGTACAAGGTCGCAGTAGATCAATTACTATTGGGTTGGCTTTATAACTCGATGACAGCGAACGTAGCTG
TTGCGTCCACACAA
Protein sequenceShow/hide protein sequence
NLGLSILRSYKLFDYLTGDKSCPPMHLVPIDMPINAEGSTLSQPSPTLNPAYKVAVDQLLLGWLYNSMTANVAVASTQ