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MS020430 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020430
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold211:658109..658298
RNA-Seq ExpressionMS020430
SyntenyMS020430
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064182.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.2e-0543.08Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMI--SAIISATRSKELEILSKKRESSNAKGLFVK
        K+  +NE+ ++L+SLP AYK +K+A K  ++ +   AI+SA R++ELE    ++E  N  GLFVK
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMI--SAIISATRSKELEILSKKRESSNAKGLFVK

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.6e-0850.77Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK
        KIG +NE  I+L+SLP AYKE+K+A++ GR+ I+   +ISA R++EL++ S++R+ SN +GLF K
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK

XP_022152111.1 uncharacterized protein LOC111019900 [Momordica charantia]5.2e-0559.18Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEI
        KIG++NE  I+L+SLP +Y+E+KVA+K GRE I+  AIISA ++KELE+
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEI

XP_038880322.1 uncharacterized protein LOC120071961 [Benincasa hispida]4.7e-0654.1Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGRE--MISAIISATRSKELEILSKKRESSNAKG
        KIG +NE  ++L+SLP  YKE+K A+K GRE   I AIISA R++ELE+ S K+E   A+G
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGRE--MISAIISATRSKELEILSKKRESSNAKG

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]5.2e-0548.44Show/hide
Query:  IGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK
        IG +NE  I+L+SLP ++K+ K A+K GRE I+  AIISA R +ELE+   K+     +GLF K
Subjt:  IGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK

TrEMBL top hitse value%identityAlignment
A0A5A7V734 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-0543.08Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMI--SAIISATRSKELEILSKKRESSNAKGLFVK
        K+  +NE+ ++L+SLP AYK +K+A K  ++ +   AI+SA R++ELE    ++E  N  GLFVK
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMI--SAIISATRSKELEILSKKRESSNAKGLFVK

A0A5C7HA42 Uncharacterized protein7.4e-0543.08Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK
        K+  +NE++I+L+SLP+++K++K A+K GR  +S    ISA +SK+LE+  +K++  NA+ LFV+
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK

A0A5C7IMX1 Integrase catalytic domain-containing protein7.4e-0544.62Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK
        K+  +NE++I+L+SLP ++K++K A+K GR  +S    ISA +SKELE+  +K++  N K LFV+
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-0850.77Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK
        KIG +NE  I+L+SLP AYKE+K+A++ GR+ I+   +ISA R++EL++ S++R+ SN +GLF K
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEILSKKRESSNAKGLFVK

A0A6J1DGM8 uncharacterized protein LOC1110199002.5e-0559.18Show/hide
Query:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEI
        KIG++NE  I+L+SLP +Y+E+KVA+K GRE I+  AIISA ++KELE+
Subjt:  KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMIS--AIISATRSKELEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATTGGTTCAGACAATGAAATTGTGATCATGTTAAGTTCACTTCCAAATGCGTATAAAGAAATAAAAGTTGCTGTCAAATGTGGGAGGGAGATGATATCAGCGATAAT
TTCTGCCACAAGAAGTAAAGAATTGGAAATTCTCTCTAAGAAAAGGGAGAGTTCCAATGCCAAGGGATTATTTGTAAAG
mRNA sequenceShow/hide mRNA sequence
AAGATTGGTTCAGACAATGAAATTGTGATCATGTTAAGTTCACTTCCAAATGCGTATAAAGAAATAAAAGTTGCTGTCAAATGTGGGAGGGAGATGATATCAGCGATAAT
TTCTGCCACAAGAAGTAAAGAATTGGAAATTCTCTCTAAGAAAAGGGAGAGTTCCAATGCCAAGGGATTATTTGTAAAG
Protein sequenceShow/hide protein sequence
KIGSDNEIVIMLSSLPNAYKEIKVAVKCGREMISAIISATRSKELEILSKKRESSNAKGLFVK