CuGenDBv2

Gene ID	MS020465
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	scaffold375:371799..371932
RNA-Seq Expression	MS020465
Synteny	MS020465
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0019843 - rRNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR014722 - Ribosomal protein L2, domain 2

Homology

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GenBank top hits

e value

%identity

Alignment

AET05149.1 ribosomal protein L2, carboxy-terminal domain protein [Medicago truncatula]

6.5e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TVE + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

PHT85294.1 50S ribosomal protein L2, chloroplastic [Capsicum annuum]

1.0e-07

77.27

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLPY E+RLI KNCS+TVE + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

PLY81814.1 hypothetical protein LSAT_3X22600 [Lactuca sativa]

6.5e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLPY E+RLI KNCS+TV  + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

TYI93527.1 hypothetical protein E1A91_D02G141400v1 [Gossypium mustelinum]

6.5e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLPY E+RLI KNCS+TV  + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

XP_042756493.1 50S ribosomal protein L2, chloroplastic-like [Lactuca sativa]

6.5e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLPY E+RLI KNCS+TV  + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

TrEMBL top hits

e value

%identity

Alignment

A0A251TFJ5 Putative ribosomal protein L2, Ribosomal protein L25/L23

1.4e-07

77.27

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP RE+RLI KNCS+TV  + NVG+NQKNL
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

A0A2G2ZTJ1 50S ribosomal protein L2, chloroplastic

4.9e-08

77.27

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLPY E+RLI KNCS+TVE + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

A0A2J6L3H3 Ribosomal_L2_C domain-containing protein

3.1e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLPY E+RLI KNCS+TV  + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

A0A396GTS7 50S ribosomal protein L2

3.1e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TVE + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

G7LJN6 Ribosomal protein L2, carboxy-terminal domain protein

3.1e-07

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TVE + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

SwissProt top hits

e value

%identity

Alignment

A4GGF8 50S ribosomal protein L2, chloroplastic

2.5e-09

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQKNL
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

P18663 50S ribosomal protein L2-A, chloroplastic

2.5e-09

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQKNL
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

Q1KXP4 50S ribosomal protein L2, chloroplastic

2.5e-09

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQKNL
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

Q2PMM3 50S ribosomal protein L2-B, chloroplastic

2.5e-09

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQKNL
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

Q8LVH2 50S ribosomal protein L2, chloroplastic

2.5e-09

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQKNL
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

6.7e-10

72.73

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

ATCG01310.1 ribosomal protein L2

6.7e-10

72.73

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Query:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL
        AKLIAKEGKS TLKLP  E+RLI KNCS+TV  + NVG+NQK+L
Subjt:  AKLIAKEGKSITLKLPYREIRLI-KNCSSTVEPMKNVGINQKNL

Sequences

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CDS sequence

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GCGAAACTAATTGCGAAAGAGGGGAAATCGATCACATTAAAATTACCTTACAGAGAGATCCGTTTGATAAAAAATTGTTCATCAACAGTCGAACCAATGAAGAATGTTGG
GATAAACCAAAAGAATTTG

mRNA sequence

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GCGAAACTAATTGCGAAAGAGGGGAAATCGATCACATTAAAATTACCTTACAGAGAGATCCGTTTGATAAAAAATTGTTCATCAACAGTCGAACCAATGAAGAATGTTGG
GATAAACCAAAAGAATTTG

Protein sequence

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AKLIAKEGKSITLKLPYREIRLIKNCSSTVEPMKNVGINQKNL

MS020465 (gene) of Bitter gourd (TR) v1 genome