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MS020474 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020474
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNudix hydrolase domain-containing protein
Genome locationscaffold375:471221..471869
RNA-Seq ExpressionMS020474
SyntenyMS020474
Gene Ontology termsGO:0006203 - dGTP catabolic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily
IPR020084 - NUDIX hydrolase, conserved site
IPR020476 - NUDIX hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018817359.1 geranyl diphosphate phosphohydrolase [Juglans regia]1.9e-5573.33Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P VGVAVFL  GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K+E++T TN LFL+ P PSHYV IFMRA LADP+Q+ +NLE
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        P+KCDGWDWY+WD LP+PLF PL   V  G++PFP
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

XP_022148636.1 geranyl diphosphate phosphohydrolase-like [Momordica charantia]2.3e-8098.61Show/hide
Query:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
        DN PPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
Subjt:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP

Query:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK
        DQIARNLEP+KCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK
Subjt:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK

XP_024196843.1 geranyl diphosphate phosphohydrolase [Rosa chinensis]3.3e-5569.93Show/hide
Query:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
        +N    P P VGV VFL +GK+VL+GRRR   GDSTFA+PGGHLEFGE FEECAARELKEETGLD++KIEF+T TNNLFLD P P+HYV IFMRA L DP
Subjt:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP

Query:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        DQ+ + +EP KCDGW WYEWD LP+PLF PL   V +GF PFP
Subjt:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

XP_041012739.1 nudix hydrolase 1 [Juglans microcarpa x Juglans regia]1.6e-5472.59Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P VGVAVFL  GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K+E++T TN LFL+ P PSHYV IFMRA L DP+Q  +NLE
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        P+KCDGWDWY+WD LP+PLF PL   V  G++PFP
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

XP_042978438.1 geranyl diphosphate phosphohydrolase-like [Carya illinoinensis]7.4e-5572.59Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P VGVAVFL +GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K+E++T TN LFL+ P PSHYV IFMRA L DP+Q  +NLE
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        P+KCDGWDWY+WD LP+PLF PL   V  G++PFP
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

TrEMBL top hitse value%identityAlignment
A0A2I4ED83 geranyl diphosphate phosphohydrolase9.4e-5673.33Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P VGVAVFL  GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K+E++T TN LFL+ P PSHYV IFMRA LADP+Q+ +NLE
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        P+KCDGWDWY+WD LP+PLF PL   V  G++PFP
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

A0A2P6R1Z9 Putative hydrolase1.6e-5569.93Show/hide
Query:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
        +N    P P VGV VFL +GK+VL+GRRR   GDSTFA+PGGHLEFGE FEECAARELKEETGLD++KIEF+T TNNLFLD P P+HYV IFMRA L DP
Subjt:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP

Query:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        DQ+ + +EP KCDGW WYEWD LP+PLF PL   V +GF PFP
Subjt:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

A0A6J1D608 geranyl diphosphate phosphohydrolase-like1.1e-8098.61Show/hide
Query:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
        DN PPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
Subjt:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP

Query:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK
        DQIARNLEP+KCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK
Subjt:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK

A0A7D5YFN1 Nudix hydrolase 1-31.6e-5569.93Show/hide
Query:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP
        +N    P P VGV VFL +GK+VL+GRRR   GDSTFA+PGGHLEFGE FEECAARELKEETGLD++KIEF+T TNNLFLD P P+HYV IFMRA L DP
Subjt:  DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADP

Query:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        DQ+ + +EP KCDGW WYEWD LP+PLF PL   V +GF PFP
Subjt:  DQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

V4TH94 Nudix hydrolase domain-containing protein1.8e-5473.33Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P VGV VF+ +GKSVL+G+RR   GDST+A+PGGHLEFGESFEECAARELKEETGLDIEKIEF+T TN++FL+NP PSHYVVIF+RA LADP Q  +NLE
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
        P KC GWDWY+W+ LPQPLF PL   V +GF+PFP
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

SwissProt top hitse value%identityAlignment
C5BHE7 NAD-capped RNA hydrolase NudC7.0e-0830.09Show/hide
Query:  VAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKC
        + V + +   +L+ R    H +  + V  G +E GE+ E+ AARE+ EE+ L ++ + ++T+          P  +    M A LAD        +PK+ 
Subjt:  VAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKC

Query:  DGWDWYEWDRLPQ
           DWY +DRLPQ
Subjt:  DGWDWYEWDRLPQ

M4I1C6 Geranyl diphosphate phosphohydrolase2.0e-5068.42Show/hide
Query:  VGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPK
        V V V L +G++VL+GRRR   GDSTF++P GHLEFGESFEECAARELKEET LDI KIE +T TNNLFLD   PS YV +FMRA LADP Q  +N+EP+
Subjt:  VGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPK

Query:  KCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP
         CDGW WYEWD LP+PLF PL N V  GF+PFP
Subjt:  KCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFP

Q8BG93 Nucleotide triphosphate diphosphatase NUDT155.0e-2239.46Show/hide
Query:  NAPPPPPPTVGVAVFLFK---GKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATL-
        NA P   P VGV V +      + VL+G+R+   G  +F +PGGHLEFGE++EECA RE  EE GL ++ + F +  N+ F++  +  HYV I M+  + 
Subjt:  NAPPPPPPTVGVAVFLFK---GKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATL-

Query:  ADPDQIARNLEPKKCDGWDWYEWDRLP--QPLFSPLLNFVNTGFDPF
           D   RN+EP+K + W+W  W+  P    LF  L      G+DPF
Subjt:  ADPDQIARNLEPKKCDGWDWYEWDRLP--QPLFSPLLNFVNTGFDPF

Q9CA40 Nudix hydrolase 11.8e-4861.19Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P V V VF+  G S+L+GRRR   G+STFA+PGGHLEFGESFEECAARE+ EETGL IEK++ +T TNN+F + P+PSHYV + +RA L DP Q  +N+E
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPF
        P+KC+GWDWY+W+ LP+PLF PL     +GF+PF
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPF

Q9NV35 Nucleotide triphosphate diphosphatase NUDT154.2e-2139.29Show/hide
Query:  PTVGVAVFLFKGK---SVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATL-ADPDQIA
        P VGV V +   K    VL+G+R+   G  +F +PGGHLEFGE++EECA RE  EE  L ++ + F +  N+ F++  +  HYV I M+  +    D   
Subjt:  PTVGVAVFLFKGK---SVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATL-ADPDQIA

Query:  RNLEPKKCDGWDWYEWDRLP--QPLFSPLLNFVNTGFDPF
        +N+EP+K + W+W  W+ LP    LF  L      G+DPF
Subjt:  RNLEPKKCDGWDWYEWDRLP--QPLFSPLLNFVNTGFDPF

Arabidopsis top hitse value%identityAlignment
AT1G68760.1 nudix hydrolase 11.3e-4961.19Show/hide
Query:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE
        P V V VF+  G S+L+GRRR   G+STFA+PGGHLEFGESFEECAARE+ EETGL IEK++ +T TNN+F + P+PSHYV + +RA L DP Q  +N+E
Subjt:  PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLE

Query:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPF
        P+KC+GWDWY+W+ LP+PLF PL     +GF+PF
Subjt:  PKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACAACGCGCCGCCGCCGCCGCCGCCGACTGTAGGCGTAGCAGTCTTCCTTTTCAAAGGAAAATCCGTGCTCATGGGCCGCCGCCGCGTCCCCCACGGAGACTCCACATT
CGCCGTCCCCGGTGGCCACCTCGAGTTCGGGGAGAGTTTCGAAGAGTGTGCGGCGAGGGAATTGAAGGAGGAGACCGGTTTGGACATCGAGAAAATCGAGTTCATTACTG
CGACGAACAATCTGTTTCTGGACAATCCGAGTCCGTCGCATTACGTGGTGATCTTCATGCGCGCAACATTGGCGGATCCGGACCAGATTGCTCGGAATTTGGAGCCGAAG
AAGTGCGATGGCTGGGACTGGTATGAATGGGATCGTCTTCCTCAACCTCTCTTTAGCCCTCTTCTGAATTTTGTTAACACTGGCTTTGATCCATTCCCTAAA
mRNA sequenceShow/hide mRNA sequence
GACAACGCGCCGCCGCCGCCGCCGCCGACTGTAGGCGTAGCAGTCTTCCTTTTCAAAGGAAAATCCGTGCTCATGGGCCGCCGCCGCGTCCCCCACGGAGACTCCACATT
CGCCGTCCCCGGTGGCCACCTCGAGTTCGGGGAGAGTTTCGAAGAGTGTGCGGCGAGGGAATTGAAGGAGGAGACCGGTTTGGACATCGAGAAAATCGAGTTCATTACTG
CGACGAACAATCTGTTTCTGGACAATCCGAGTCCGTCGCATTACGTGGTGATCTTCATGCGCGCAACATTGGCGGATCCGGACCAGATTGCTCGGAATTTGGAGCCGAAG
AAGTGCGATGGCTGGGACTGGTATGAATGGGATCGTCTTCCTCAACCTCTCTTTAGCCCTCTTCTGAATTTTGTTAACACTGGCTTTGATCCATTCCCTAAA
Protein sequenceShow/hide protein sequence
DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPK
KCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK