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MS020475 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020475
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexpressed protein localized to the inner membrane of the chloroplast.
Genome locationscaffold375:473547..476289
RNA-Seq ExpressionMS020475
SyntenyMS020475
Gene Ontology termsGO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010970.1 hypothetical protein SDJN02_27768, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-6590.34Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKSI+FGQAPKLAIQ+KC RTN KLSVRAEYND GR GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        KTRQTLN KIGQLNSAIDNVSSRLRGGN TP+VPVEADPE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

XP_022148671.1 uncharacterized protein LOC111017273 [Momordica charantia]4.6e-73100Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        TRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
Subjt:  TRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

XP_022986629.1 uncharacterized protein LOC111484314 [Cucurbita maxima]7.9e-6590.34Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKSI+FGQAPKLAIQ+KC R+N KLSVRAEYND GR GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        KTRQTLN KIGQLNSAIDNVSSRLRGGN TPAVPVEADPE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

XP_023512433.1 uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo]7.9e-6590.34Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKSI+FGQ PKLAIQ+KC RTN KLSVRAEYND GR GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        KTRQTLN KIGQLNSAIDNVSSRLRGGN TPAVPVEADPE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

XP_038902580.1 uncharacterized protein LOC120089235 [Benincasa hispida]3.2e-6693.79Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDG-RGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKSI+FGQAPKLAIQ+K  RTN+KLSVRAEYNDG R GGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDG-RGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        KTRQTLNAKI QLNSAIDNVSSRLRGGNNTPAVPVEADPE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

TrEMBL top hitse value%identityAlignment
A0A1S3C9M4 uncharacterized protein LOC1034983956.1e-6387.67Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKS++FGQ PKLAI++KC +TN KLSVRAEYND GR GGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE+GFRRAKRP+YYDEGLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPV-EADPEKEATM
        KTRQTLNAKI QLNSAIDNVSSRLRGGNNTPAVPV EA+PE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPV-EADPEKEATM

A0A5D3CQ66 Uncharacterized protein6.1e-6387.67Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKS++FGQ PKLAI++KC +TN KLSVRAEYND GR GGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE+GFRRAKRP+YYDEGLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPV-EADPEKEATM
        KTRQTLNAKI QLNSAIDNVSSRLRGGNNTPAVPV EA+PE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPV-EADPEKEATM

A0A6J1D647 uncharacterized protein LOC1110172732.2e-73100Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        TRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
Subjt:  TRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

A0A6J1FVP6 uncharacterized protein LOC1114488975.0e-6590.34Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKSI+FGQAPKLAIQ+KC RT+ KLSVRAEYND GR GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        KTRQTLN KIGQLNSAIDNVSSRLRGGN TPAVPVEADPE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

A0A6J1JGK4 uncharacterized protein LOC1114843143.8e-6590.34Show/hide
Query:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE
        GGLIKASDLSSKSI+FGQAPKLAIQ+KC R+N KLSVRAEYND GR GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLE
Subjt:  GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYND-GRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLE

Query:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM
        KTRQTLN KIGQLNSAIDNVSSRLRGGN TPAVPVEADPE EATM
Subjt:  KTRQTLNAKIGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast.2.9e-1740.74Show/hide
Query:  SITFGQAPKLAIQKKCLRTNRKLSVRAEY--NDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDE--GLEKTRQTLNAK
        S++FG      +     RT R L++++ Y  +DG G  G FV GF+LGG + G L  ++APQI +++   D     R      YDE   LEKTR+ L  K
Subjt:  SITFGQAPKLAIQKKCLRTNRKLSVRAEY--NDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDE--GLEKTRQTLNAK

Query:  IGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEAT
        I QLNSAID+VSS+L+   +TP     +  E EAT
Subjt:  IGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEAT

AT3G02900.1 unknown protein5.7e-3763.36Show/hide
Query:  LAIQKKCLRTNRKLSVRAEYNDGRGGGG--DFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKIGQLNSAIDNV
        L +Q K  R++ KLSV A Y  G  GGG  DFV GFLLG AVFGTLAYIFAPQIRRS+L+E+EYGF++ ++P+YYDEGLE+ R+ LN KIGQLNSAID V
Subjt:  LAIQKKCLRTNRKLSVRAEYNDGRGGGG--DFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKIGQLNSAIDNV

Query:  SSRLRGG-------NNTPAVPVEADPEKEAT
        SSRL+GG        ++P+VPVE D E EAT
Subjt:  SSRLRGG-------NNTPAVPVEADPEKEAT

AT3G02900.2 unknown protein5.7e-3763.36Show/hide
Query:  LAIQKKCLRTNRKLSVRAEYNDGRGGGG--DFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKIGQLNSAIDNV
        L +Q K  R++ KLSV A Y  G  GGG  DFV GFLLG AVFGTLAYIFAPQIRRS+L+E+EYGF++ ++P+YYDEGLE+ R+ LN KIGQLNSAID V
Subjt:  LAIQKKCLRTNRKLSVRAEYNDGRGGGG--DFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKIGQLNSAIDNV

Query:  SSRLRGG-------NNTPAVPVEADPEKEAT
        SSRL+GG        ++P+VPVE D E EAT
Subjt:  SSRLRGG-------NNTPAVPVEADPEKEAT

AT5G16660.1 unknown protein1.1e-4066.22Show/hide
Query:  IKASDLS--SKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDG--RGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGL
        +KA+ LS  +K  +  +   L I KK  RT RK SV A Y DG   G  GDF+AGFLLGGAVFG +AYIFAPQIRRS+LN EDEYGF + K+P YYDEGL
Subjt:  IKASDLS--SKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDG--RGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGL

Query:  EKTRQTLNAKIGQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEKEAT
        EKTR+TLN KIGQLNSAIDNVSSRLRG   NT +  VPVE DPE EAT
Subjt:  EKTRQTLNAKIGQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEKEAT

AT5G16660.2 unknown protein2.1e-3965.07Show/hide
Query:  IKASDLS--SKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGLEK
        +KA+ LS  +K  +  +   L I KK  RT RK SV A      G  GDF+AGFLLGGAVFG +AYIFAPQIRRS+LN EDEYGF + K+P YYDEGLEK
Subjt:  IKASDLS--SKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKIGQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEKEAT
        TR+TLN KIGQLNSAIDNVSSRLRG   NT +  VPVE DPE EAT
Subjt:  TRQTLNAKIGQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEKEAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGGGATTGATCAAGGCGTCAGATCTCTCCTCGAAGTCCATTACCTTTGGGCAAGCACCAAAACTCGCCATTCAAAAGAAGTGCTTGAGAACCAACCGCAAGTTATCTGT
TCGTGCAGAGTACAATGATGGTAGAGGTGGAGGTGGGGATTTTGTTGCTGGTTTTCTTCTAGGGGGTGCAGTATTTGGAACTTTAGCTTATATTTTTGCTCCGCAGATCA
GGAGATCTCTACTAAATGAAGACGAGTACGGTTTTCGGAGGGCCAAGCGTCCAATCTACTATGACGAAGGTTTAGAGAAAACCAGACAGACGTTGAATGCAAAAATAGGC
CAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGAAACAATACACCAGCTGTGCCAGTTGAAGCTGATCCTGAGAAAGAAGCTACCATG
mRNA sequenceShow/hide mRNA sequence
GGGGGATTGATCAAGGCGTCAGATCTCTCCTCGAAGTCCATTACCTTTGGGCAAGCACCAAAACTCGCCATTCAAAAGAAGTGCTTGAGAACCAACCGCAAGTTATCTGT
TCGTGCAGAGTACAATGATGGTAGAGGTGGAGGTGGGGATTTTGTTGCTGGTTTTCTTCTAGGGGGTGCAGTATTTGGAACTTTAGCTTATATTTTTGCTCCGCAGATCA
GGAGATCTCTACTAAATGAAGACGAGTACGGTTTTCGGAGGGCCAAGCGTCCAATCTACTATGACGAAGGTTTAGAGAAAACCAGACAGACGTTGAATGCAAAAATAGGC
CAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGAAACAATACACCAGCTGTGCCAGTTGAAGCTGATCCTGAGAAAGAAGCTACCATG
Protein sequenceShow/hide protein sequence
GGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKIG
QLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM