; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020538 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020538
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBasic helix-loop-helix transcription factor
Genome locationscaffold375:1005949..1006459
RNA-Seq ExpressionMS020538
SyntenyMS020538
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR024097 - Basic helix-loop-helix leucine zipper transcription factor
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148863.3 transcription factor bHLH78 isoform X2 [Cucumis sativus]1.4e-4081.58Show/hide
Query:  TEETETWKQ--NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPT
        TEETE WK+  NSK SEE+KK +Y+HVRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLSMK+AALN  
Subjt:  TEETETWKQ--NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPT

Query:  LEFINVDHQFAKQV
        ++FINVD   AKQ+
Subjt:  LEFINVDHQFAKQV

XP_022146228.1 transcription factor bHLH63-like [Momordica charantia]3.2e-53100Show/hide
Query:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
Subjt:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        EFINVDHQFAKQV
Subjt:  EFINVDHQFAKQV

XP_038901960.1 transcription factor bHLH63-like isoform X1 [Benincasa hispida]3.1e-4083.93Show/hide
Query:  TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        TEETE WK+ NSKA EEV+KSEY+HVRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLS K+AALN  +
Subjt:  TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQ
        +FINVD   AKQ
Subjt:  EFINVDHQFAKQ

XP_038901961.1 transcription factor bHLH63-like isoform X2 [Benincasa hispida]3.1e-4083.93Show/hide
Query:  TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        TEETE WK+ NSKA EEV+KSEY+HVRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLS K+AALN  +
Subjt:  TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQ
        +FINVD   AKQ
Subjt:  EFINVDHQFAKQ

XP_038901962.1 transcription factor bHLH62-like isoform X3 [Benincasa hispida]1.1e-4084.07Show/hide
Query:  TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        TEETE WK+ NSKA EEV+KSEY+HVRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLS K+AALN  +
Subjt:  TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        +FINVD   AKQV
Subjt:  EFINVDHQFAKQV

TrEMBL top hitse value%identityAlignment
A0A5D3DY78 Transcription factor bHLH781.3e-3980.34Show/hide
Query:  TEETETWKQ---NSKA--SEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAAL
        TEETE WK+   NSKA  SEE+KK +Y+HVRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLSMK+AAL
Subjt:  TEETETWKQ---NSKA--SEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAAL

Query:  NPTLEFINVDHQFAKQV
        N  ++FINVD   AKQ+
Subjt:  NPTLEFINVDHQFAKQV

A0A6J1CY11 transcription factor bHLH63-like1.5e-53100Show/hide
Query:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
Subjt:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        EFINVDHQFAKQV
Subjt:  EFINVDHQFAKQV

A0A6J1G5R2 transcription factor bHLH63-like6.9e-3880.36Show/hide
Query:  TEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE
        TEETET KQ+S+A      S+Y+HVRAR GQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLSMKLA  NP L+
Subjt:  TEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE

Query:  FINVDHQFAKQV
        FINVD  F KQV
Subjt:  FINVDHQFAKQV

A0A6J1L4Z2 transcription factor bHLH63-like isoform X24.5e-3778.76Show/hide
Query:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        +TEETET KQ+S+A      S+Y+ VRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLSMKLA  NP L
Subjt:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        +FINVD  F+K V
Subjt:  EFINVDHQFAKQV

A0A6J1L7P5 transcription factor bHLH63-like isoform X11.2e-3779.65Show/hide
Query:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        +TEETET KQ+S+A      S+Y+ VRARRGQATDSHSLAERARREKISERMK LQNLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLSMKLA  NP L
Subjt:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        +FINVD  F+KQV
Subjt:  EFINVDHQFAKQV

SwissProt top hitse value%identityAlignment
Q6NKN9 Transcription factor bHLH744.2e-3267.57Show/hide
Query:  EETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEF
        +  ET  + S  SEE  K  YIH+RARRGQAT+SHSLAER RREKISERM+ LQ LVPGC++I GKA MLDEIINYVQSLQQQVEFLSMKLA +NP +  
Subjt:  EETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEF

Query:  INVDHQFAKQV
        I++D   AK +
Subjt:  INVDHQFAKQV

Q8GY61 Transcription factor bHLH634.0e-3569.03Show/hide
Query:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        + EE      +SK ++E++K++YIHVRARRGQATDSHS+AER RREKISERMK LQ+LVPGCD+I GKAGMLDEIINYVQSLQ+Q+EFLSMKLA +NP  
Subjt:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        +F ++D  FAK+V
Subjt:  EFINVDHQFAKQV

Q93VJ4 Transcription factor BEE 29.0e-3571.57Show/hide
Query:  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA
        N++ S E++K +YIHVRARRG+ATD HSLAERARREKIS++MKCLQ++VPGC+++ GKAGMLDEIINYVQSLQQQVEFLSMKL+ +NP LE  ++D   A
Subjt:  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA

Query:  KQ
        KQ
Subjt:  KQ

Q9CAA9 Transcription factor bHLH492.1e-3166.97Show/hide
Query:  EETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEF
        +++ + KQ  K S +  K  YIHVRARRGQAT+SHSLAER RREKISERMK LQ+LVPGC+++ GKA MLDEIINYVQSLQ+QVEFLSMKLA +NP ++F
Subjt:  EETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEF

Query:  INVDHQFAK
         N++   AK
Subjt:  INVDHQFAK

Q9ZPW3 Transcription factor HBI11.9e-3273.2Show/hide
Query:  TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE
        ++T K+ SK + E +K +YIHVRARRGQATD HSLAERARREKIS++MK LQ++VPGC+++ GKAGMLDEIINYVQ LQ+QVEFLSMKLA LNP LE
Subjt:  TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE

Arabidopsis top hitse value%identityAlignment
AT2G18300.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.3e-3373.2Show/hide
Query:  TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE
        ++T K+ SK + E +K +YIHVRARRGQATD HSLAERARREKIS++MK LQ++VPGC+++ GKAGMLDEIINYVQ LQ+QVEFLSMKLA LNP LE
Subjt:  TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE

AT2G18300.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.3e-3373.2Show/hide
Query:  TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE
        ++T K+ SK + E +K +YIHVRARRGQATD HSLAERARREKIS++MK LQ++VPGC+++ GKAGMLDEIINYVQ LQ+QVEFLSMKLA LNP LE
Subjt:  TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE

AT4G34530.1 cryptochrome-interacting basic-helix-loop-helix 12.9e-3669.03Show/hide
Query:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL
        + EE      +SK ++E++K++YIHVRARRGQATDSHS+AER RREKISERMK LQ+LVPGCD+I GKAGMLDEIINYVQSLQ+Q+EFLSMKLA +NP  
Subjt:  RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTL

Query:  EFINVDHQFAKQV
        +F ++D  FAK+V
Subjt:  EFINVDHQFAKQV

AT4G36540.1 BR enhanced expression 26.4e-3671.57Show/hide
Query:  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA
        N++ S E++K +YIHVRARRG+ATD HSLAERARREKIS++MKCLQ++VPGC+++ GKAGMLDEIINYVQSLQQQVEFLSMKL+ +NP LE  ++D   A
Subjt:  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA

Query:  KQ
        KQ
Subjt:  KQ

AT4G36540.2 BR enhanced expression 26.4e-3671.57Show/hide
Query:  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA
        N++ S E++K +YIHVRARRG+ATD HSLAERARREKIS++MKCLQ++VPGC+++ GKAGMLDEIINYVQSLQQQVEFLSMKL+ +NP LE  ++D   A
Subjt:  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA

Query:  KQ
        KQ
Subjt:  KQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAACAGAGGAAACAGAGACATGGAAGCAGAATTCAAAAGCATCTGAAGAAGTTAAAAAATCAGAATACATTCACGTTCGAGCACGTCGAGGCCAAGCCACGGACAGCCA
TAGCCTGGCAGAAAGAGCGAGGAGAGAGAAGATTAGTGAGAGGATGAAATGTCTGCAGAATTTGGTGCCTGGGTGTGACAGAATCGCTGGAAAAGCTGGAATGCTCGACG
AGATTATAAATTATGTTCAATCTCTTCAGCAGCAAGTGGAGTTCTTATCAATGAAGTTGGCTGCTCTGAATCCCACACTCGAGTTCATCAATGTCGACCACCAATTTGCC
AAACAGGTG
mRNA sequenceShow/hide mRNA sequence
AGAACAGAGGAAACAGAGACATGGAAGCAGAATTCAAAAGCATCTGAAGAAGTTAAAAAATCAGAATACATTCACGTTCGAGCACGTCGAGGCCAAGCCACGGACAGCCA
TAGCCTGGCAGAAAGAGCGAGGAGAGAGAAGATTAGTGAGAGGATGAAATGTCTGCAGAATTTGGTGCCTGGGTGTGACAGAATCGCTGGAAAAGCTGGAATGCTCGACG
AGATTATAAATTATGTTCAATCTCTTCAGCAGCAAGTGGAGTTCTTATCAATGAAGTTGGCTGCTCTGAATCCCACACTCGAGTTCATCAATGTCGACCACCAATTTGCC
AAACAGGTG
Protein sequenceShow/hide protein sequence
RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFA
KQV