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MS020554 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020554
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold375:1150613..1150813
RNA-Seq ExpressionMS020554
SyntenyMS020554
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QHO31919.1 Pentatricopeptide repeat-containing protein [Arachis hypogaea]1.5e-1874.24Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     SEI+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

RYR45114.1 hypothetical protein Ahy_A07g030979 isoform C [Arachis hypogaea]4.4e-1872.73Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     S+I+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

XP_016171339.1 pentatricopeptide repeat-containing protein At4g21065 [Arachis ipaensis]1.5e-1874.24Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     SEI+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

XP_020962458.1 pentatricopeptide repeat-containing protein At4g21065-like [Arachis ipaensis]4.4e-1872.73Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     S+I+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

XP_025615078.1 pentatricopeptide repeat-containing protein At4g21065-like [Arachis hypogaea]1.5e-1874.24Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     SEI+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

TrEMBL top hitse value%identityAlignment
A0A2P5CVR0 DYW domain containing protein8.1e-1871.21Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI  +  +EI+IVKNL SCE CH FMK ISKIY+R+IIMRDRI FHHF NG CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

A0A445C2F6 DYW_deaminase domain-containing protein2.1e-1872.73Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     S+I+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

A0A6P4CPK8 pentatricopeptide repeat-containing protein At4g210658.1e-1871.21Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     S+I+IVKNL SCE CHEFMK +SKIYQREII+RDRI FHHF NG+CSCKD+
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

A0A6P5ML97 pentatricopeptide repeat-containing protein At4g21065-like6.2e-1871.21Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     SEI+IVKNL SCE CHEFMK +SKIYQ+ II+RDRI FHHF NG+CSCKDY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

W9RRB5 DYW_deaminase domain-containing protein2.8e-1871.21Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI  +  SEI+I KNL SCE CH FMK ISKIYQR+IIMRDRI FHHF NG+CSC+DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

SwissProt top hitse value%identityAlignment
Q9FG16 Pentatricopeptide repeat-containing protein At5g065408.9e-1454.55Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A G++     + I+IVKNL  CE CH   K IS++Y RE+I+RDR  FHHF NG CSC+DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

Q9FI80 Pentatricopeptide repeat-containing protein At5g489101.4e-1456.06Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +K+ATA GLI  +    I+IVKNL  CE CH  +K ISK+Y+R+I +RDR  FHHF +G+CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

Q9FJY7 Pentatricopeptide repeat-containing protein At5g665208.9e-1454.55Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA   GLI     + I+I+KNL  C+ CH+  K ISKIY+R+I+MRDR  FHHF +G CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic1.4e-1459.09Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     +++ IVKNL  C  CHE  K ISKIY+REII RDR  FHHF +G CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

Q9LXY5 Pentatricopeptide repeat-containing protein At3g565508.9e-1451.52Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GL+     + ++I KNL  C  CH F K +SK + REII+RDR+ FHHF +G CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.7e-1659.09Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GLI     +++ IVKNL  C  CHE  K ISKIY+REII RDR  FHHF +G CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

AT3G56550.1 Pentatricopeptide repeat (PPR) superfamily protein6.3e-1551.52Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A GL+     + ++I KNL  C  CH F K +SK + REII+RDR+ FHHF +G CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein6.3e-1554.55Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA A G++     + I+IVKNL  CE CH   K IS++Y RE+I+RDR  FHHF NG CSC+DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein9.7e-1656.06Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +K+ATA GLI  +    I+IVKNL  CE CH  +K ISK+Y+R+I +RDR  FHHF +G+CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.3e-1554.55Show/hide
Query:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY
        +KLA   GLI     + I+I+KNL  C+ CH+  K ISKIY+R+I+MRDR  FHHF +G CSC DY
Subjt:  KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAAACTTGCTACTGCTGTTGGACTGATCCTATTAAACATGAATTCTGAAATTCAAATTGTTAAGAATTTATGGTCCTGCGAGTACTGCCATGAGTTTATGAAACCGAT
TTCAAAGATTTACCAAAGGGAGATCATAATGAGGGATAGAATCTGCTTCCACCATTTCGGGAATGGCAACTGCTCTTGCAAGGACTATCAG
mRNA sequenceShow/hide mRNA sequence
AAAAAACTTGCTACTGCTGTTGGACTGATCCTATTAAACATGAATTCTGAAATTCAAATTGTTAAGAATTTATGGTCCTGCGAGTACTGCCATGAGTTTATGAAACCGAT
TTCAAAGATTTACCAAAGGGAGATCATAATGAGGGATAGAATCTGCTTCCACCATTTCGGGAATGGCAACTGCTCTTGCAAGGACTATCAG
Protein sequenceShow/hide protein sequence
KKLATAVGLILLNMNSEIQIVKNLWSCEYCHEFMKPISKIYQREIIMRDRICFHHFGNGNCSCKDYQ