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MS020558 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020558
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein CASPARIAN STRIP INTEGRITY FACTOR 1
Genome locationscaffold375:1164838..1164981
RNA-Seq ExpressionMS020558
SyntenyMS020558
Gene Ontology termsGO:0010039 - response to iron ion (biological process)
GO:0010447 - response to acidic pH (biological process)
GO:0055072 - iron ion homeostasis (biological process)
GO:2000067 - regulation of root morphogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0048226 - Casparian strip (cellular component)
InterPro domainsIPR038974 - Protein Casparian strip integrity factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010912.1 Protein CASPARIAN STRIP INTEGRITY FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1168.75Show/hide
Query:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++  +R    EMED+HERLLR NTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
XP_008460971.1 PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo]5.7e-1278Show/hide
Query:  IYYQDGRRKRMG-EMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++D +RK  G EMED IHERLLR NTKDYGRYDPAPAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMG-EMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
XP_011649242.1 protein CASPARIAN STRIP INTEGRITY FACTOR 2 [Cucumis sativus]3.0e-1377.55Show/hide
Query:  IYYQDGRRKRMGEMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++DG+RK  GEME+ IHERLLR NTKDYGRYDP+PAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
XP_022146128.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1 [Momordica charantia]5.4e-1893.75Show/hide
Query:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + +QDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
XP_038902215.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Benincasa hispida]9.4e-1581.25Show/hide
Query:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++D +RK  GEMEDIHERLLR NTKDYGRYDPAPAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
TrEMBL top hitse value%identityAlignment
A0A0A0LJ22 Uncharacterized protein1.5e-1377.55Show/hide
Query:  IYYQDGRRKRMGEMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++DG+RK  GEME+ IHERLLR NTKDYGRYDP+PAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
A0A1S3CEV9 uncharacterized protein LOC1034996982.8e-1278Show/hide
Query:  IYYQDGRRKRMG-EMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++D +RK  G EMED IHERLLR NTKDYGRYDPAPAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMG-EMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
A0A5A7TUS0 Uncharacterized protein2.8e-1278Show/hide
Query:  IYYQDGRRKRMG-EMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++D +RK  G EMED IHERLLR NTKDYGRYDPAPAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMG-EMED-IHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
A0A6J1CXR3 protein CASPARIAN STRIP INTEGRITY FACTOR 12.6e-1893.75Show/hide
Query:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + +QDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
A0A6J1JEM0 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like1.1e-1168.75Show/hide
Query:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        + ++  +R    EMED+HERLLR NTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN
SwissProt top hitse value%identityAlignment
O65684 Protein CASPARIAN STRIP INTEGRITY FACTOR 26.4e-0664.52Show/hide
Query:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        HER+LR N++DYG   P P  V+PPFKLIPN
Subjt:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
Q84MD2 Protein CASPARIAN STRIP INTEGRITY FACTOR 11.7e-0670.97Show/hide
Query:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        HERLLR NTKDYG   P+P   +PPFKLIPN
Subjt:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
Arabidopsis top hitse value%identityAlignment
AT2G16385.1 unknown protein1.2e-0770.97Show/hide
Query:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        HERLLR NTKDYG   P+P   +PPFKLIPN
Subjt:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
AT4G34600.1 unknown protein4.5e-0764.52Show/hide
Query:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN
        HER+LR N++DYG   P P  V+PPFKLIPN
Subjt:  HERLLRANTKDYGRYDPAPAFVKPPFKLIPN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATATTATCAGGATGGAAGGAGGAAGAGAATGGGTGAAATGGAAGACATCCATGAAAGGCTTCTGAGGGCAAACACCAAAGATTATGGAAGGTATGATCCAGCTCCAGC
TTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAAC
mRNA sequenceShow/hide mRNA sequence
ATATATTATCAGGATGGAAGGAGGAAGAGAATGGGTGAAATGGAAGACATCCATGAAAGGCTTCTGAGGGCAAACACCAAAGATTATGGAAGGTATGATCCAGCTCCAGC
TTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAAC
Protein sequenceShow/hide protein sequence
IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN