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MS020575 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020575
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB-box type zinc finger family protein
Genome locationscaffold375:1314179..1314330
RNA-Seq ExpressionMS020575
SyntenyMS020575
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603735.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia]8.1e-0963.46Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

TYK13089.1 putative zinc finger protein [Cucumis melo var. makuwa]1.2e-0761.54Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  D   LCW CD KVH ANFL+GKHLRV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

XP_022950367.1 putative zinc finger protein At1g68190 [Cucurbita moschata]8.1e-0963.46Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

XP_022977340.1 zinc finger protein CONSTANS-LIKE 13-like [Cucurbita maxima]1.8e-0863.46Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  DE RLCW CD KVH ANFL+GKH RV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

XP_023544021.1 zinc finger protein CONSTANS-LIKE 13-like [Cucurbita pepo subsp. pepo]8.1e-0963.46Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

TrEMBL top hitse value%identityAlignment
A0A166AAI8 B box-type domain-containing protein2.1e-0762.22Show/hide
Query:  CKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        CKS A V C  DE RLCW CD KVH+ANFL+ +H+R  L H CQA
Subjt:  CKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

A0A6J1GEL4 putative zinc finger protein At1g681903.9e-0963.46Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

A0A6J1IM17 zinc finger protein CONSTANS-LIKE 13-like8.7e-0963.46Show/hide
Query:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +KKLC  C   A V+C  DE RLCW CD KVH ANFL+GKH RV L H CQA
Subjt:  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

A0A6L5BDM3 B box-type domain-containing protein1.1e-0657.78Show/hide
Query:  CKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        CK+ A V C  D+ RLCW CD KVH+ANFL+ +H+R  L H CQA
Subjt:  CKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

A0A7J7M9Q1 B box-type domain-containing protein3.7e-0752.94Show/hide
Query:  IKKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        +K+   CKSPA + C  DE  LCW CD K+H ANFL+ +H R  L HGCQ+
Subjt:  IKKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

SwissProt top hitse value%identityAlignment
Q9SYM2 B-box zinc finger protein 224.8e-0460.61Show/hide
Query:  ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV
        A V+C  DE  LCW CD K+H AN L GKH RV
Subjt:  ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV

Arabidopsis top hitse value%identityAlignment
AT1G78600.1 light-regulated zinc finger protein 13.4e-0560.61Show/hide
Query:  ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV
        A V+C  DE  LCW CD K+H AN L GKH RV
Subjt:  ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV

AT1G78600.2 light-regulated zinc finger protein 13.4e-0560.61Show/hide
Query:  ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV
        A V+C  DE  LCW CD K+H AN L GKH RV
Subjt:  ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV

AT2G31380.1 salt tolerance homologue7.5e-0552.63Show/hide
Query:  KSPANVVCGVDETRLC-WCDWKVHNANFLLGKHLRVFL
        K+PA ++C  DE  LC  CD +VH AN L  KH R+FL
Subjt:  KSPANVVCGVDETRLC-WCDWKVHNANFLLGKHLRVFL

AT4G27310.1 B-box type zinc finger family protein7.3e-0848Show/hide
Query:  KKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        KK   C   A + C  D+  LCW CD KVH ANFL+ KH R  L   CQ+
Subjt:  KKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA

AT5G54470.1 B-box type zinc finger family protein9.5e-0848Show/hide
Query:  KKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA
        KK   C   A + C  D+  LCW CD KVH ANFL+ KH+R  L   CQ+
Subjt:  KKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAAGAAATTGTGCACGTGCAAGTCTCCGGCGAATGTGGTGTGTGGAGTGGATGAAACAAGGCTGTGTTGGTGCGATTGGAAGGTCCACAACGCCAATTTTCTGCTGGG
GAAACATTTGAGGGTTTTTCTCTTCCATGGCTGCCAAGCT
mRNA sequenceShow/hide mRNA sequence
ATTAAGAAATTGTGCACGTGCAAGTCTCCGGCGAATGTGGTGTGTGGAGTGGATGAAACAAGGCTGTGTTGGTGCGATTGGAAGGTCCACAACGCCAATTTTCTGCTGGG
GAAACATTTGAGGGTTTTTCTCTTCCATGGCTGCCAAGCT
Protein sequenceShow/hide protein sequence
IKKLCTCKSPANVVCGVDETRLCWCDWKVHNANFLLGKHLRVFLFHGCQA