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MS020602 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020602
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Genome locationscaffold375:1570109..1570402
RNA-Seq ExpressionMS020602
SyntenyMS020602
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045689.1 hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa]4.9e-3482.47Show/hide
Query:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
        MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ ILVLVRCLSSMD SS RYY C CNR GWK  +CRCGHGS
Subjt:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
KAG6571042.1 hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia]4.9e-3478.57Show/hide
Query:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW
        MTYCYGC PRPS PLP P+L+LLAVV ILIGLSSLFPSE IDFSEFQINWPLLAVP+ +LVLVRCLS++D SSSRYY C CNR GWK   CRCG G+W
Subjt:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW
KAG6605007.1 hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia]6.2e-2975.51Show/hide
Query:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW
        MTYCYG  P PS PLP PILVLL VV ILIGLSSLF SE IDFSEFQINWPLLAVP+ ILVLVR LSS+DSSS     CAC+R GWK  HCRC HG+W
Subjt:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW
KGN61893.1 hypothetical protein Csa_006600 [Cucumis sativus]5.4e-3380.41Show/hide
Query:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
        MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ ILVLVRCL+SMD SS RYY C C+R GWK  HCRCG GS
Subjt:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
KMT01460.1 hypothetical protein BVRB_9g214670 [Beta vulgaris subsp. vulgaris]1.7e-0742.86Show/hide
Query:  CYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPS-EGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRC
        C G T R   PLPYP+L++L VVSI +G+   F S E  + +EF INW LL  P+ ++  VR LSS      R YG  C    W    C C
Subjt:  CYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPS-EGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRC
TrEMBL top hitse value%identityAlignment
A0A0A0LJB6 Uncharacterized protein2.6e-3380.41Show/hide
Query:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
        MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ ILVLVRCL+SMD SS RYY C C+R GWK  HCRCG GS
Subjt:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
A0A1R3JDI7 Uncharacterized protein1.9e-0742.68Show/hide
Query:  YCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNR
        YC  C  RPS+P+PY +L+ LA+  +L+ LSSL   E  ++ +E  + W +L   + +LV+VRCLSS DS    +Y C C R
Subjt:  YCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNR
A0A2C9UZU5 Uncharacterized protein2.5e-0748.84Show/hide
Query:  PLPYPILVLLAVVSILIGLSSLFPSEGI-DFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWK-TTHCRCGHGS
        PLPYP+L++LAV+SI +G+S  F  E I + +E QINW LLA P+ +L LVR LSSM++S   +   A +   WK  TH R   GS
Subjt:  PLPYPILVLLAVVSILIGLSSLFPSEGI-DFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWK-TTHCRCGHGS
A0A5D3BJW1 Uncharacterized protein2.4e-3482.47Show/hide
Query:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
        MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ ILVLVRCLSSMD SS RYY C CNR GWK  +CRCGHGS
Subjt:  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS
A0A6J1C2N0 uncharacterized protein LOC1110078955.5e-0755Show/hide
Query:  PLPYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLLAVPVTILVLVRCLSSMDSS
        PLPYP+L+LL VV + +G S  F  E  ++ +E QINW L A PV ++VLVRCLSS+D S
Subjt:  PLPYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLLAVPVTILVLVRCLSSMDSS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21180.1 unknown protein3.2e-0749.18Show/hide
Query:  APLPYPILVLLAVVSILIGLSSLFPS--EGIDFSEFQINWPLLAVPVTILVLVRCLSSMDS
        +PLPYP+L++LAV S+ + LSS + S  E  + +E QIN+ LL +P+ ++VLVR LSSM++
Subjt:  APLPYPILVLLAVVSILIGLSSLFPS--EGIDFSEFQINWPLLAVPVTILVLVRCLSSMDS
AT2G21185.1 unknown protein2.1e-0637.5Show/hide
Query:  PYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLL-AVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRC
        P P++V++ V  +L+ LSS+   E  +   E  ++W LL AVP+ +L  VRCLS +++S    Y C C R  W+   C C
Subjt:  PYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLL-AVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCC
CTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCTGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTT
CCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGCTCCTGG
mRNA sequenceShow/hide mRNA sequence
ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCC
CTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCTGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTT
CCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGCTCCTGG
Protein sequenceShow/hide protein sequence
MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW