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MS020624 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020624
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGH10 domain-containing protein
Genome locationscaffold375:1720992..1721141
RNA-Seq ExpressionMS020624
SyntenyMS020624
Gene Ontology termsGO:0045493 - xylan catabolic process (biological process)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domainsIPR044846 - Glycoside hydrolase family 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010861.1 rsgI6 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1894Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEA+TDDHGSFSFYGFLGEYEV+VKYENRT TSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
XP_008457673.1 PREDICTED: endo-1,4-beta-xylanase B [Cucumis melo]1.1e-1896Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEARTD+HGSFSFYGFLGEYEVSVKYENR+ATSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
XP_022146196.1 uncharacterized protein LOC111015472 [Momordica charantia]1.0e-19100Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
XP_023512912.1 uncharacterized protein LOC111777502 [Cucurbita pepo subsp. pepo]6.6e-1996Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEA+TDDHGSFSFYGFLGEYEVSVKYENRT TSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
XP_038901688.1 endo-1,4-beta-xylanase 5 [Benincasa hispida]5.0e-1998Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEARTDDHGSFSFYGFLGEYEVSV YENRTATSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
TrEMBL top hitse value%identityAlignment
A0A1S3C664 endo-1,4-beta-xylanase B5.4e-1996Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEARTD+HGSFSFYGFLGEYEVSVKYENR+ATSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
A0A5A7TQR6 Endo-1,4-beta-xylanase B5.4e-1996Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEARTD+HGSFSFYGFLGEYEVSVKYENR+ATSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
A0A6J1CYK4 uncharacterized protein LOC1110154724.9e-20100Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
A0A6J1FT78 uncharacterized protein LOC1114485547.1e-1994Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEA+TDDHGSFSFYGFLGEYEV+VKYENRT TSTFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
A0A6J1J8Y6 uncharacterized protein LOC1114836712.7e-1892Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        IEA+TDDHGSFSFYGFLGEYEV+VKYENRT +STFPVSVGDETKHFSIQL
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38650.1 Glycosyl hydrolase family 10 protein1.3e-1256Show/hide
Query:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL
        ++A TDDHGSFSF+GFLGEY V + Y+ +T  S+F +S G ETKH  +Q+
Subjt:  IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGAAGCTCGGACAGATGACCATGGTTCATTCAGTTTTTATGGATTTTTGGGTGAATACGAAGTGAGTGTTAAGTATGAAAACAGAACTGCTACTTCAACTTTCCCTGT
CTCAGTTGGAGATGAAACTAAACACTTCAGCATTCAGTTG
mRNA sequenceShow/hide mRNA sequence
ATTGAAGCTCGGACAGATGACCATGGTTCATTCAGTTTTTATGGATTTTTGGGTGAATACGAAGTGAGTGTTAAGTATGAAAACAGAACTGCTACTTCAACTTTCCCTGT
CTCAGTTGGAGATGAAACTAAACACTTCAGCATTCAGTTG
Protein sequenceShow/hide protein sequence
IEARTDDHGSFSFYGFLGEYEVSVKYENRTATSTFPVSVGDETKHFSIQL