; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020652 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020652
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptiontRNA-intron lyase
Genome locationscaffold375:1910070..1910789
RNA-Seq ExpressionMS020652
SyntenyMS020652
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605517.1 tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp. sororia]1.9e-11990.34Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MG RWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G  NENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

XP_022146301.1 tRNA-splicing endonuclease subunit Sen2-1 [Momordica charantia]2.2e-13699.58Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQ DLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
        SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV

XP_022947592.1 tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata]3.7e-12090.34Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

XP_022947593.1 tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata]3.7e-12090.34Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

XP_023532286.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo]1.2e-12191.18Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

TrEMBL top hitse value%identityAlignment
A0A6J1CYW3 tRNA-intron lyase1.1e-13699.58Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQ DLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
        SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1FWV5 tRNA-intron lyase3.4e-11988.33Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQ DL NRACFGR I+TA+KDKQWFQ G+EEAFYLS HL CLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW+ MKS+KATFPEFY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNEN RLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
        SVN+NGS SVSPS LD+YSIEERTVTRWSPEQCRENP KV
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1G6W2 tRNA-intron lyase1.8e-12090.34Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

A0A6J1G716 tRNA-intron lyase1.8e-12090.34Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRACFGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDC
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW YMKSQKATFPEFYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA
        +VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA

A0A6J1JBL2 tRNA-intron lyase4.5e-11988.33Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQ DL NRACFGR I+TAD DKQWFQ G+EEAFYLS HL CLKIVDGQD 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW+ MKSQKATFPEFY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNENGRLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
        SVN+NG+ SVSPS LDS+SIEERTVTRWSPEQCRENP KV
Subjt:  SVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV

SwissProt top hitse value%identityAlignment
C3MQX7 tRNA-splicing endonuclease1.4e-0828.36Show/hide
Query:  QGLLSGCSVLYQADEEQADLFNRACFGRPI-VTADKDK----QWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRM
        + LL G  VL    +E   +++   +G+ I ++  KD     +  +L + E+ YL+     +K++D        E+L+EY       F   Y+ Y+ LR 
Subjt:  QGLLSGCSVLYQADEEQADLFNRACFGRPI-VTADKDK----QWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRM

Query:  KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVL
        K ++VR G +YG DF  Y   P L H+ + V+ +
Subjt:  KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVL

Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen25.3e-6152.07Show/hide
Query:  GPRWK----GKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS--GCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIV
        GPRWK    GK   + A A+PMS IV +L++S   S    +LS  G S +     EQA + NRA FG  I  A   K WFQL  EE FYL   L C++ V
Subjt:  GPRWK----GKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS--GCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIV

Query:  DGQDCEKNAE-QLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVA
        D  D ++ +E +LW+Y +S   +FPE YKAY HLR+KNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG    N  GRL VWSD LC +R  GSVA
Subjt:  DGQDCEKNAE-QLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVA

Query:  KTLLVLSVNNNGSSSV-SPSFLDSYSIEERTVTRWSPEQCRE
        KTLLVL+++++    + SP  L+   + ERT+TRW  +QCRE
Subjt:  KTLLVLSVNNNGSSSV-SPSFLDSYSIEERTVTRWSPEQCRE

Q97ZY3 tRNA-splicing endonuclease6.2e-0929.85Show/hide
Query:  QGLLSGCSVLYQADEEQADLFNRACFGRPI----VTADKD-KQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRM
        + LL G  VL  + +E   L++   +G+PI        KD  +  +L + E+ YL+     + +VD        ++L+EY   +   F   YK Y+ LR 
Subjt:  QGLLSGCSVLYQADEEQADLFNRACFGRPI----VTADKD-KQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRM

Query:  KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVL
        K ++VR G +YG DF  Y   P L H+ + V+ +
Subjt:  KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVL

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-21.8e-6955.88Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQA+L +R CFGR +++A+K K+W QL  EEAF+L  +LKC+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         +N    W YMKS++  FP F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVWSD  C +RL GSVAKTLL L
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN
         VN N  G        L+++++EE+T++RWSPE  RE+
Subjt:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-14.8e-7056.61Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD
        M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+A+L +R CFGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD

Query:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV
         E N   LW  M S K  F   YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+VWSD  C++RL GSVAK+LLV
Subjt:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV

Query:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        L VN   N      P  L+ Y++EE+T+ RWSPE  RE+  +
Subjt:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases5.7e-1847.96Show/hide
Query:  AQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKN
        A G LS C+V      EQA+L +R CFGR +  A+KDK+W QL  EEAF+L   LKC+KI        N   LW  ++S K  F   YKAY HLR KN
Subjt:  AQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKN

AT3G45590.1 splicing endonuclease 13.4e-7156.61Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD
        M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+A+L +R CFGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD

Query:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV
         E N   LW  M S K  F   YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+VWSD  C++RL GSVAK+LLV
Subjt:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV

Query:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        L VN   N      P  L+ Y++EE+T+ RWSPE  RE+  +
Subjt:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

AT3G45590.2 splicing endonuclease 13.4e-7156.61Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD
        M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+A+L +R CFGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+ 
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQD

Query:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV
         E N   LW  M S K  F   YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+VWSD  C++RL GSVAK+LLV
Subjt:  CEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLV

Query:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK
        L VN   N      P  L+ Y++EE+T+ RWSPE  RE+  +
Subjt:  LSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAK

AT5G60230.1 splicing endonuclease 21.3e-7055.88Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQA+L +R CFGR +++A+K K+W QL  EEAF+L  +LKC+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         +N    W YMKS++  FP F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVWSD  C +RL GSVAKTLL L
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN
         VN N  G        L+++++EE+T++RWSPE  RE+
Subjt:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 21.3e-7055.88Show/hide
Query:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC
        M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQA+L +R CFGR +++A+K K+W QL  EEAF+L  +LKC+KI     C
Subjt:  MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDC

Query:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         +N    W YMKS++  FP F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVWSD  C +RL GSVAKTLL L
Subjt:  EKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN
         VN N  G        L+++++EE+T++RWSPE  RE+
Subjt:  SVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGG
ACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAGCCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAAT
GGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTAT
ATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGC
TTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTC
TCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATT
GAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGG
ACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAGCCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAAT
GGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTAT
ATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGC
TTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTC
TCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATT
GAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTG
Protein sequenceShow/hide protein sequence
MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEY
MKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSI
EERTVTRWSPEQCRENPAKV