; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020671 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020671
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWUSCHEL-related homeobox 3
Genome locationscaffold375:2071655..2072717
RNA-Seq ExpressionMS020671
SyntenyMS020671
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0099402 - plant organ development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR044555 - Protein WUSCHEL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570743.1 WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5669.68Show/hide
Query:  MSPSSNSA--PSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQF
        MSP++ +A  PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD+ F
Subjt:  MSPSSNSA--PSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQF

Query:  FQCYFL-----HHHQRVPQQPLLTNPACFVHEREEASATTKVEGCSDDRMMV-VEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
        F C+       HHHQR P  PLL  P  F  E      TT+VEG  DD M V  ED ETTCR  +LRTLELFPV    VK EE GSGN
Subjt:  FQCYFL-----HHHQRVPQQPLLTNPACFVHEREEASATTKVEGCSDDRMMV-VEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

XP_004148244.1 WUSCHEL-related homeobox 3 [Cucumis sativus]1.7e-5167.01Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ---
        MSPSS   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD+Q   
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ---

Query:  --FFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVEGCSDDRMM--------VVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
          FFQ YFL HH  VPQ  P L +P+    E  E  A T+VEG    R M          ED ETTC   +LRTLELFPV  S VK EE  SGN
Subjt:  --FFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVEGCSDDRMM--------VVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

XP_008463857.1 PREDICTED: WUSCHEL-related homeobox 3 [Cucumis melo]3.4e-5267.36Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDD----N
        MSPSS   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD    +
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDD----N

Query:  QFFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVE--------GCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
         FFQ YFL HH  VPQ  P L +P+    E  E  A T+VE        G  D   +  ED ETTC   SLRTLELFPV GS VK EE  SGN
Subjt:  QFFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVE--------GCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

XP_022944088.1 putative WUSCHEL-related homeobox 2 [Cucurbita moschata]8.6e-5669.57Show/hide
Query:  MSPSSNSA---PSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ
        MSP++ +A   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD+ 
Subjt:  MSPSSNSA---PSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ

Query:  FFQCYFLHHHQRVPQQPLLTNPACFVHEREEASATTKVEGCSDDRMMV-VEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
        FF C+  HH + +P  PLL  P  F  E  E   TT+VEG  DD M V  ED ETTC   +LRTLELFPV    VK EE GSGN
Subjt:  FFQCYFLHHHQRVPQQPLLTNPACFVHEREEASATTKVEGCSDDRMMV-VEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

XP_038902731.1 WUSCHEL-related homeobox 3-like [Benincasa hispida]9.2e-5064.89Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQ
        MSP S   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH  L+KRHRFD++  F 
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQ

Query:  CYFLHHHQRVPQQPLLTNPACFVHERE-EASATTKVE-------GCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
         YFL  H  VPQ     +P+   H++E E    T+VE       G  +   +  ED ETTCR  +LRTLELFPV  S +K EE  SGN
Subjt:  CYFLHHHQRVPQQPLLTNPACFVHERE-EASATTKVE-------GCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

TrEMBL top hitse value%identityAlignment
A0A0A0KHT6 Homeobox domain-containing protein8.1e-5267.01Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ---
        MSPSS   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD+Q   
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ---

Query:  --FFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVEGCSDDRMM--------VVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
          FFQ YFL HH  VPQ  P L +P+    E  E  A T+VEG    R M          ED ETTC   +LRTLELFPV  S VK EE  SGN
Subjt:  --FFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVEGCSDDRMM--------VVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

A0A1S3CK69 WUSCHEL-related homeobox 31.6e-5267.36Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDD----N
        MSPSS   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD    +
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDD----N

Query:  QFFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVE--------GCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
         FFQ YFL HH  VPQ  P L +P+    E  E  A T+VE        G  D   +  ED ETTC   SLRTLELFPV GS VK EE  SGN
Subjt:  QFFQCYFLHHHQRVPQ-QPLLTNPACFVHEREEASATTKVE--------GCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

A0A4Y1RMG3 Homeodomain-like superfamily protein4.2e-3269.03Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQ
        MSP++NS+ SRWCPTPEQ+MILEE+Y  G++TPNA+QIQHIT+ LSLYGKIEGKNVFYWFQNHKARDRQKLRRKL KQLQ Q  Q+L   H    N    
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQ

Query:  CYFLHHHQRVPQQ
         Y  HHHQ+  QQ
Subjt:  CYFLHHHQRVPQQ

A0A6J1FXP0 putative WUSCHEL-related homeobox 24.1e-5669.57Show/hide
Query:  MSPSSNSA---PSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ
        MSP++ +A   PSRWCPTPEQVMILEEIY NGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL+KQLQ QHH   +KR RFDD+ 
Subjt:  MSPSSNSA---PSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQ

Query:  FFQCYFLHHHQRVPQQPLLTNPACFVHEREEASATTKVEGCSDDRMMV-VEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN
        FF C+  HH + +P  PLL  P  F  E  E   TT+VEG  DD M V  ED ETTC   +LRTLELFPV    VK EE GSGN
Subjt:  FFQCYFLHHHQRVPQQPLLTNPACFVHEREEASATTKVEGCSDDRMMV-VEDEETTCRGESLRTLELFPVSGSCVKAEENGSGN

A0A6P5S0Z0 WUSCHEL-related homeobox 3-like isoform X23.2e-3266.38Show/hide
Query:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQ
        MSP++NS+ SRWCPTPEQ+MILEE+Y  G++TPNA+QIQHIT+ LSLYGKIEGKNVFYWFQNHKARDRQKLRRKL KQLQ    Q LL  H  + + +  
Subjt:  MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQ

Query:  CYFLHHHQRVPQQPLL
          + HHH +  QQ LL
Subjt:  CYFLHHHQRVPQQPLL

SwissProt top hitse value%identityAlignment
A2XZR3 Putative WUSCHEL-related homeobox 23.3e-2655.08Show/hide
Query:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQCYFLHHHQR
        +RWCPTPEQ+M+LEE+Y  GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L       HH +               ++ HHH  
Subjt:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQCYFLHHHQR

Query:  -----VPQQPLLT--NPA
             VP   LLT  NP+
Subjt:  -----VPQQPLLT--NPA

Q5W7C3 Putative WUSCHEL-related homeobox 29.6e-2659.18Show/hide
Query:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQCYFLHHH
        +RWCPTPEQ+M+LEE+Y  GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L       HH +               ++ HHH
Subjt:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQCYFLHHH

Q6S3I3 WUSCHEL-related homeobox 3B2.8e-2568.42Show/hide
Query:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQ
        +RWCPTPEQ+MILEE+Y +G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + Q Q+ Q
Subjt:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQ

Q70UV1 WUSCHEL-related homeobox 3A2.8e-2568.42Show/hide
Query:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQ
        +RWCPTPEQ+MILEE+Y +G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + Q Q+ Q
Subjt:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQ

Q9SIB4 WUSCHEL-related homeobox 38.4e-3073.17Show/hide
Query:  APSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLK
        A +RWCPTPEQ+MILEE+Y +G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  Q HQ+ L+
Subjt:  APSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLK

Arabidopsis top hitse value%identityAlignment
AT1G46480.1 WUSCHEL related homeobox 41.6e-2063.01Show/hide
Query:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQ
        +RW PT EQ+ ILE +Y  G++TPNA QI+HIT  L  YGKIEGKNVFYWFQNHKAR+RQK +R     L  Q
Subjt:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQ

AT2G28610.1 Homeodomain-like superfamily protein6.0e-3173.17Show/hide
Query:  APSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLK
        A +RWCPTPEQ+MILEE+Y +G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  Q HQ+ L+
Subjt:  APSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLK

AT3G11260.1 WUSCHEL related homeobox 55.2e-1960Show/hide
Query:  RWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQ
        RW PT EQ+ IL +++  GL+TP   QIQ I++ LS YGKIE KNVFYWFQNHKAR+RQK RRK+       HHQ
Subjt:  RWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQ

AT3G18010.1 WUSCHEL related homeobox 11.2e-2054.44Show/hide
Query:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFF
        SRW PTP+Q+ +LEE+Y  G +TP+A  IQ IT+ L  YGKIEGKNVFYWFQNHKAR+RQK RR    Q++  H + +L       N  F
Subjt:  SRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFF

AT5G59340.1 WUSCHEL related homeobox 25.2e-1956.34Show/hide
Query:  SSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK
        +  ++ SRW PT +Q+ +LE +Y  G++TP+A QIQ IT  L  YG IEGKNVFYWFQNHKAR RQK +++
Subjt:  SSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCCTTCTTCTAATTCTGCGCCATCTCGATGGTGCCCAACGCCGGAACAGGTGATGATTTTGGAGGAGATTTATGGCAATGGTTTGAAGACTCCCAATGCCACGCA
GATTCAGCACATAACTTCCCATCTTTCGTTGTATGGGAAAATTGAGGGCAAAAACGTCTTCTACTGGTTTCAGAACCACAAGGCCAGAGACCGCCAGAAGCTGCGGAGGA
AGCTCTTTAAGCAGCTCCAGTTCCAGCACCACCAGATGTTGTTGAAACGCCACCGTTTTGATGACAACCAGTTTTTCCAGTGCTACTTTCTTCACCACCACCAGCGAGTG
CCGCAACAGCCCCTGCTTACTAATCCTGCGTGTTTTGTTCACGAGAGGGAGGAGGCGTCGGCGACGACGAAGGTGGAGGGTTGCAGCGATGATCGGATGATGGTGGTGGA
AGATGAAGAGACGACATGTCGTGGAGAGAGTCTTCGGACGTTGGAGCTGTTTCCGGTGAGTGGGAGTTGCGTGAAGGCAGAAGAAAACGGTAGCGGGAACGAGTTACGGC
AGAGT
mRNA sequenceShow/hide mRNA sequence
ATGTCCCCTTCTTCTAATTCTGCGCCATCTCGATGGTGCCCAACGCCGGAACAGGTGATGATTTTGGAGGAGATTTATGGCAATGGTTTGAAGACTCCCAATGCCACGCA
GATTCAGCACATAACTTCCCATCTTTCGTTGTATGGGAAAATTGAGGGCAAAAACGTCTTCTACTGGTTTCAGAACCACAAGGCCAGAGACCGCCAGAAGCTGCGGAGGA
AGCTCTTTAAGCAGCTCCAGTTCCAGCACCACCAGATGTTGTTGAAACGCCACCGTTTTGATGACAACCAGTTTTTCCAGTGCTACTTTCTTCACCACCACCAGCGAGTG
CCGCAACAGCCCCTGCTTACTAATCCTGCGTGTTTTGTTCACGAGAGGGAGGAGGCGTCGGCGACGACGAAGGTGGAGGGTTGCAGCGATGATCGGATGATGGTGGTGGA
AGATGAAGAGACGACATGTCGTGGAGAGAGTCTTCGGACGTTGGAGCTGTTTCCGGTGAGTGGGAGTTGCGTGAAGGCAGAAGAAAACGGTAGCGGGAACGAGTTACGGC
AGAGT
Protein sequenceShow/hide protein sequence
MSPSSNSAPSRWCPTPEQVMILEEIYGNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLFKQLQFQHHQMLLKRHRFDDNQFFQCYFLHHHQRV
PQQPLLTNPACFVHEREEASATTKVEGCSDDRMMVVEDEETTCRGESLRTLELFPVSGSCVKAEENGSGNELRQS