CuGenDBv2

Gene ID	MS020734
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold178:342992..343249
RNA-Seq Expression	MS020734
Synteny	MS020734
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG2284496.1 hypothetical protein Bca52824_055716 [Brassica carinata]

7.1e-21

56.98

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLE FN+ LLAKQ W+VLS P+ L+++    RYFPNS+ LDA L  +  Y W SL++G +LLIKG + RVGDG+SIR++ D WI
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

XP_013645843.2 uncharacterized protein LOC106350515 [Brassica napus]

7.1e-21

52.33

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLE FN+ LL KQVWR+L  PN+L+++IL  RYFP+ NIL+A L  KA Y W S++ G EL++KG +  +G+G++ +M+ED W+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

XP_013659339.1 uncharacterized protein LOC106364266 [Brassica napus]

4.2e-21

56.98

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLE FN+ LLAKQ W+VLS P+ L++++L  RYFPNSN L+A + ++  Y W SL++G ELLIKG + RVGDG+SI ++ D WI
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

7.1e-21

55.81

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLEGFN+ L+AKQVWRVL  PN+LVS++L  +YF +S +L A       Y W   +WG +LLIKG + RVG+GS+I +F DPWI
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

8.4e-22

53.49

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLEGFN+ L+AK VWR L  PNLLVSK+L  +YF ++++L A  ++K+ Y W   +WG +LL+KG ++RVG+GS+I+ F DPW+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

TrEMBL top hits

e value

%identity

Alignment

A0A6J0LQI7 uncharacterized protein LOC108833114

8.5e-20

52.33

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLE FN+ LL K VWR+L +P  L+S++L  RYFP+ +IL+A L  KA Y W SL++G +LL KG +  +G+GSS+ M+ DPW+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

A0A6J1BRN0 uncharacterized protein LOC111004787

3.4e-21

55.81

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLEGFN+ L+AKQVWRVL  PN+LVS++L  +YF +S +L A       Y W   +WG +LLIKG + RVG+GS+I +F DPWI
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

A0A6J1DX30 uncharacterized protein LOC111024874

4.1e-22

53.49

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLEGFN+ L+AK VWR L  PNLLVSK+L  +YF ++++L A  ++K+ Y W   +WG +LL+KG ++RVG+GS+I+ F DPW+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

A0A803Q185 Uncharacterized protein

1.7e-20

51.16

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDL  FN+ LLAKQ+WR +  PN L +++L   YFP +++L+A     A ++W SLMWG +L++KG + RVGDGS+IR+ EDPW+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

A0A803QJV0 Uncharacterized protein

8.5e-20

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDLE FN+ LLAKQ+WR L +P  L +K+L   YFPN ++L A     A ++W SL+WG E+++KG + RVG+G  +R+ EDPW+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

1.6e-15

40.7

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDL  FN+ LLAKQ +R++ +P+ L+S++L  RYFP+S++++  +  +  Y W S++ G ELL +G    +GDG   +++ D WI
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

8.1e-15

38.37

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        F+D+E FN  LL KQ+WR+LS P  L++K+   RYF  S+ L+A L ++  ++W S+    E+L +G +  VG+G  I ++   W+
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.1e-16

40.7

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Query:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI
        FRDL  FN+ LLAKQ +R++ +P+ L+S++L  RYFP+S++++  +  +  Y W S++ G ELL +G    +GDG   +++ D WI
Subjt:  FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

Sequences

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CDS sequence

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TTTAGAGATTTGGAGGGTTTCAATAAGGATTTGTTAGCTAAGCAAGTTTGGAGGGTTCTTAGTGAACCAAATCTCCTTGTTTCCAAGATTCTAGCATGTCGGTACTTCCC
CAACAGCAATATTCTGGATGCAGATTTGGATAACAAAGCTTTCTATTTGTGGACGAGTCTTATGTGGGGCAGTGAGCTTCTTATTAAGGGGCGTAAGATGCGTGTGGGTG
ATGGTAGTTCAATCCGTATGTTTGAGGACCCTTGGATC

mRNA sequence

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Protein sequence

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FRDLEGFNKDLLAKQVWRVLSEPNLLVSKILACRYFPNSNILDADLDNKAFYLWTSLMWGSELLIKGRKMRVGDGSSIRMFEDPWI

MS020734 (gene) of Bitter gourd (TR) v1 genome