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MS020735 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020735
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold178:344182..344451
RNA-Seq ExpressionMS020735
SyntenyMS020735
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4355486.1 hypothetical protein F8388_015240 [Cannabis sativa]7.5e-0542.86Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRK
        +AE+ A+R GI LA   S+  ++V SDCL  IN L+      S+ GLL++EIL L+ HF S+ F ++ R+
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRK

KAF4357254.1 hypothetical protein G4B88_012621 [Cannabis sativa]7.5e-0542.03Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNR
        +AE +AV+ G+RLA + S+   +V +DCL  IN L      +S  G+L  +IL L+ HF S++F HV+R
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNR

KAF4369473.1 hypothetical protein G4B88_029571 [Cannabis sativa]3.3e-0536.36Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS
        +AE  AV  G+RLA + ++   +V +DCL  I+ L      HS+ G+L  EIL L+ HF S++F HV+R    + ++LA  + ++ +S
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS

KAF4384266.1 hypothetical protein G4B88_016832 [Cannabis sativa]8.2e-0434.83Show/hide
Query:  LIAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS
        L+AE+ A+R GI+LA R S    ++ SDC  AI  L     Y ++ G LV++I +  + F  + F  VNR    + ++LA  + L++ S
Subjt:  LIAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS

KAF7835740.1 ribonuclease H [Senna tora]1.7e-0435.37Show/hide
Query:  AELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHAS
        AELMA++ G+ L ++   G ++V  DCLEAINL+    +   + G L+++I  + + F+ I   HV R+     D LA+  S
Subjt:  AELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHAS

TrEMBL top hitse value%identityAlignment
A0A7J6DLU8 Uncharacterized protein4.0e-0441.79Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHV
        +AE  A+R GI LA   S+  ++V SDC+  IN L+      S+ GLL++EIL L+ HF S+  L +
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHV

A0A7J6EAV9 RNase H domain-containing protein3.6e-0542.86Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRK
        +AE+ A+R GI LA   S+  ++V SDCL  IN L+      S+ GLL++EIL L+ HF S+ F ++ R+
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRK

A0A7J6EFZ9 Uncharacterized protein3.6e-0542.03Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNR
        +AE +AV+ G+RLA + S+   +V +DCL  IN L      +S  G+L  +IL L+ HF S++F HV+R
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNR

A0A7J6FFJ3 Uncharacterized protein1.6e-0536.36Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS
        +AE  AV  G+RLA + ++   +V +DCL  I+ L      HS+ G+L  EIL L+ HF S++F HV+R    + ++LA  + ++ +S
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS

A0A803Q7N5 Uncharacterized protein4.3e-0636.36Show/hide
Query:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS
        +AE +AV+ G+RLA + S+   +V +DCL  IN L      +S+ G+L  +IL L+ HF S++F HV+R    + ++LA  + ++ +S
Subjt:  IAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTTTGATTGCAGAACTGATGGCGGTTCGGGAAGGGATTAGGCTTGCTGTACGGCCGAGTCTTGGATGGGTGGTGGTTCTCTCAGACTGTTTGGAAGCGATCAATCTTCT
TCATGGGAGAGTTGTCTACCATTCAGAGACTGGTTTGTTGGTAGAGGAGATCTTGGAGCTGGAGAGTCATTTCTCAAGTATTGATTTCCTTCATGTAAATCGGAAGCATA
CTACGCTGGAAGATAGCTTAGCCAGACATGCGTCATTGTCCAAGACTTCT
mRNA sequenceShow/hide mRNA sequence
CCTTTGATTGCAGAACTGATGGCGGTTCGGGAAGGGATTAGGCTTGCTGTACGGCCGAGTCTTGGATGGGTGGTGGTTCTCTCAGACTGTTTGGAAGCGATCAATCTTCT
TCATGGGAGAGTTGTCTACCATTCAGAGACTGGTTTGTTGGTAGAGGAGATCTTGGAGCTGGAGAGTCATTTCTCAAGTATTGATTTCCTTCATGTAAATCGGAAGCATA
CTACGCTGGAAGATAGCTTAGCCAGACATGCGTCATTGTCCAAGACTTCT
Protein sequenceShow/hide protein sequence
PLIAELMAVREGIRLAVRPSLGWVVVLSDCLEAINLLHGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHTTLEDSLARHASLSKTS