CuGenDBv2

Gene ID	MS020739
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	scaffold178:402192..402395
RNA-Seq Expression	MS020739
Synteny	MS020739
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.6e-12

53.73

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   W LSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.6e-13

55.22

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   WALSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.8e-12

53.73

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   W LSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.6e-13

55.22

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   WALSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]

5.1e-14

51.43

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Query:  LSAIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRW---ALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        ++ IWK +  KK+K F WSLA+R +N  ++LQ+++   +LSPSIC LC  EAE+ DHLFLHC F++ GW+
Subjt:  LSAIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRW---ALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

7.9e-13

53.73

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   W LSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.4e-12

53.73

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   W LSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

2.7e-13

55.22

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   WALSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein

2.7e-13

55.22

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        +WK  FPKK K F W+L H  INT DRLQKR   WALSP+ C +C    E ++HLF+HCP+S   WS
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKR---WALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

A0A5D3E632 Protein FAM91A1

2.5e-14

51.43

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Query:  LSAIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRW---ALSPSICSLCCMEAESLDHLFLHCPFSYAGWS
        ++ IWK +  KK+K F WSLA+R +N  ++LQ+++   +LSPSIC LC  EAE+ DHLFLHC F++ GW+
Subjt:  LSAIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRW---ALSPSICSLCCMEAESLDHLFLHCPFSYAGWS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G02650.1 Ribonuclease H-like superfamily protein

9.0e-09

35.94

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Query:  AIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRWALSPSICSLCCMEAESLDHLFLHCPFSYAGW
        AIWK     KIK F W      + T+ RL+ R   +  IC  CC+E E++ H+  +CP++ + W
Subjt:  AIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRWALSPSICSLCCMEAESLDHLFLHCPFSYAGW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

8.7e-04

33.9

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Query:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKRWALSPSICSLCCMEAESLDHLFLHCPFS
        +W      K  V  W      + T DR+    A + S C LC    E+ DHLF  CP+S
Subjt:  IWKFRFPKKIKVFPWSLAHRGINTHDRLQKRWALSPSICSLCCMEAESLDHLFLHCPFS

Sequences

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CDS sequence

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CTCTCAGCAATCTGGAAATTCAGATTTCCTAAGAAGATAAAAGTCTTCCCTTGGTCCCTAGCACATAGAGGAATCAACACACATGACCGTCTCCAGAAAAGATGGGCTCT
CTCCCCCTCAATCTGCTCTTTGTGCTGTATGGAAGCAGAATCTTTGGACCATCTCTTCCTCCATTGTCCCTTCTCTTATGCCGGATGGTCAATG

mRNA sequence

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Protein sequence

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LSAIWKFRFPKKIKVFPWSLAHRGINTHDRLQKRWALSPSICSLCCMEAESLDHLFLHCPFSYAGWSM

MS020739 (gene) of Bitter gourd (TR) v1 genome