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MS020741 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020741
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold178:404261..404506
RNA-Seq ExpressionMS020741
SyntenyMS020741
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07150.1 TatD related DNase [Prunus dulcis]1.1e-1558.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
BBN69274.1 TatD related DNase [Prunus dulcis]1.1e-1558.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-1558.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
VVA31869.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-1558.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
XP_023518084.1 uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo]2.8e-1451.9Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        GS K+  PDG +++FF++  N +++D++ VF DFF+NG IN   NE Y+YL+ KK  A  V+DFRPISL T LYKII++
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
TrEMBL top hitse value%identityAlignment
A0A4Y1RS61 TatD related DNase5.4e-1658.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
A0A5E4F090 Reverse transcriptase domain-containing protein (Fragment)5.4e-1658.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
A0A5E4FWN6 Reverse transcriptase domain-containing protein (Fragment)5.4e-1658.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
A0A5H2XQW2 TatD related DNase5.4e-1658.23Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+DFRPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
M5X4S0 Reverse transcriptase domain-containing protein (Fragment)1.2e-1556.96Show/hide
Query:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        G  KSP PDG S  FF+    ++K DL+ V QDFFQ+G +N  TNE ++ L+PKK  + KV+D+RPISLVTSLYK+ISK
Subjt:  GSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein1.6e-0432.89Show/hide
Query:  KSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
        KSP  DG++ +FF+   + L  D   V  + F+ G +        L L+PKK     + ++RP+SL+++ YKI++K
Subjt:  KSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein3.1e-0834.67Show/hide
Query:  KSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIIS
        K+P PD  + +FF  S  ++K   +   ++FF+ G++ +R N   + L+PK    +++S FRP+S  T +YKII+
Subjt:  KSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCGCTTCCGGTTCTCTCAAGTCTCCGAGGCCGGATGGGATATCAAATAAATTTTTTAAAAGGTCTTGTAATATTCTGAAACTCGACTTACTAGGAGTGTTCCAAGATTT
TTTTCAAAATGGTAACATCAACCGGCGAACAAACGAAATATATCTCTACCTCGTTCCAAAGAAACATAGAGCAAATAAGGTCAGTGATTTCCGTCCTATCAGCTTGGTCA
CCTCTCTTTATAAGATCATTTCGAAA
mRNA sequenceShow/hide mRNA sequence
ATCGCTTCCGGTTCTCTCAAGTCTCCGAGGCCGGATGGGATATCAAATAAATTTTTTAAAAGGTCTTGTAATATTCTGAAACTCGACTTACTAGGAGTGTTCCAAGATTT
TTTTCAAAATGGTAACATCAACCGGCGAACAAACGAAATATATCTCTACCTCGTTCCAAAGAAACATAGAGCAAATAAGGTCAGTGATTTCCGTCCTATCAGCTTGGTCA
CCTCTCTTTATAAGATCATTTCGAAA
Protein sequenceShow/hide protein sequence
IASGSLKSPRPDGISNKFFKRSCNILKLDLLGVFQDFFQNGNINRRTNEIYLYLVPKKHRANKVSDFRPISLVTSLYKIISK