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MS020742 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020742
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold178:404870..405067
RNA-Seq ExpressionMS020742
SyntenyMS020742
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008081 - phosphoric diester hydrolase activity (molecular function)
GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity (molecular function)
InterPro domainsIPR020847 - AP endonuclease 1, binding site
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONH99726.1 hypothetical protein PRUPE_6G046000 [Prunus persica]6.9e-0845.16Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG
        +SWN+RGLG+  ++ ++KE L+ + P++VILQETK  A+DR ++ SVW SR   W+ +   G
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG

RVX04307.1 Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]1.2e-0744.44Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA
        +SWNVRGLG+ +++ ++K+ L    PDVV++QETK    DR  + SVW +R   W++L   GA
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA

XP_021820446.1 uncharacterized protein LOC110762145 [Prunus avium]5.3e-0845.16Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG
        +SWN+RGLG+  ++ ++KE L ++ PD+VILQETK   +DR ++ SVW SR   W+ +   G
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]1.9e-1049.21Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA
        ++WNVRGLG++S++A IK+++  +CPD+VIL ETK ++++   IKS+W S    W SLD  GA
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA

XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]4.0e-0849.15Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLD
        +SWNVRG+    ++  +K++++K  PDVV+LQETKL  +DR IIKS+W S+  GW  L+
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLD

TrEMBL top hitse value%identityAlignment
A0A251NK70 Uncharacterized protein3.3e-0845.16Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG
        +SWN+RGLG+  ++ ++KE L+ + P++VILQETK  A+DR ++ SVW SR   W+ +   G
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG

A0A438J5R7 Beta-arabinofuranosyltransferase RAY15.7e-0844.44Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA
        +SWNVRGLG+ +++ ++K+ L    PDVV++QETK    DR  + SVW +R   W++L   GA
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA

A0A6J1CVN2 uncharacterized protein LOC1110146579.4e-1149.21Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA
        ++WNVRGLG++S++A IK+++  +CPD+VIL ETK ++++   IKS+W S    W SLD  GA
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA

A0A6J1DMQ9 uncharacterized protein LOC1110219832.0e-0849.15Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLD
        +SWNVRG+    ++  +K++++K  PDVV+LQETKL  +DR IIKS+W S+  GW  L+
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLD

A0A6P5T1U8 uncharacterized protein LOC1107621452.6e-0845.16Show/hide
Query:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG
        +SWN+RGLG+  ++ ++KE L ++ PD+VILQETK   +DR ++ SVW SR   W+ +   G
Subjt:  VSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTCTCCTGTCTCATGGAATGTTAGAGGTTTAGGGGCTTCCTCGGAAAAAGCTCTCATTAAAGAATCTCTCTTAAAAGTATGTCCGGATGTAGTAATCCTCCAAGAAAC
TAAGTTAGCTGCAGTTGATAGATCAATCATTAAGTCAGTTTGGAGATCCAGAAGAACGGGCTGGATCTCCTTAGATGTTGAGGGTGCC
mRNA sequenceShow/hide mRNA sequence
TGCTCTCCTGTCTCATGGAATGTTAGAGGTTTAGGGGCTTCCTCGGAAAAAGCTCTCATTAAAGAATCTCTCTTAAAAGTATGTCCGGATGTAGTAATCCTCCAAGAAAC
TAAGTTAGCTGCAGTTGATAGATCAATCATTAAGTCAGTTTGGAGATCCAGAAGAACGGGCTGGATCTCCTTAGATGTTGAGGGTGCC
Protein sequenceShow/hide protein sequence
CSPVSWNVRGLGASSEKALIKESLLKVCPDVVILQETKLAAVDRSIIKSVWRSRRTGWISLDVEGA