CuGenDBv2

Gene ID	MS020773
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S26
Genome location	scaffold487:368152..369337
RNA-Seq Expression	MS020773
Synteny	MS020773
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0010043 - response to zinc ion (biological process) GO:0019430 - removal of superoxide radicals (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004784 - superoxide dismutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599946.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-51

98.08

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        +RRR
Subjt:  IRRR

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]

3.6e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

6.1e-51

98.08

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        +RRR
Subjt:  IRRR

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]

3.6e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

XP_023529394.1 40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]

3.6e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM45 40S ribosomal protein S26

1.7e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

A0A1S3C5M1 40S ribosomal protein S26

1.7e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

A0A5A7VIJ0 40S ribosomal protein S26

1.7e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

A0A6J1FWD9 40S ribosomal protein S26

1.7e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

A0A6J1JIN0 40S ribosomal protein S26

1.7e-51

99.04

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

2.0e-36

70.87

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRR
         +R
Subjt:  IRR

P49206 40S ribosomal protein S26-1

3.4e-44

84.62

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

P49216 40S ribosomal protein S26

2.0e-44

81.55

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK GRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRR
         RR
Subjt:  IRR

Q8LPJ7 40S ribosomal protein S26-2

3.4e-44

84.62

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

Q9LYK9 40S ribosomal protein S26-3

8.9e-45

85.58

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK  RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

2.4e-45

84.62

Show/hide

Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

AT2G40590.1 Ribosomal protein S26e family protein

2.4e-45

84.62

Show/hide

Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

AT3G56340.1 Ribosomal protein S26e family protein

6.3e-46

85.58

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Query:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNK  RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

Sequences

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CDS sequence

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CAGACTTTCAAGCGCAGGAATGGCGGGCGTAACAAGCTCGGCCGTGGACACGTCAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATTAA
GAGGTTTCTGGTAAGGAACATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATATACTCTCCCTAAGCTTTATGCTAAGATGCAGTACT
GTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGTTCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATTAGACGCAGG

mRNA sequence

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Protein sequence

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QTFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR

MS020773 (gene) of Bitter gourd (TR) v1 genome