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MS020788 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020788
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionARM repeat superfamily protein
Genome locationscaffold487:534679..537420
RNA-Seq ExpressionMS020788
SyntenyMS020788
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146451.1 uncharacterized protein LOC101212969 isoform X1 [Cucumis sativus]1.1e-8591.11Show/hide
Query:  FQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM
        FQ+LCRREPVRTLQFRTFSAY+E EIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNL+QQSV+LL+VKDPLFKRMGASRLARFSIDD++RMKIVE+
Subjt:  FQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM

Query:  GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEA GALHKAGAILVIKSTPDS ED K+NE+KSNL+KRF DLRYDVSS
Subjt:  GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

XP_011655026.1 uncharacterized protein LOC101212969 isoform X2 [Cucumis sativus]9.0e-8589.62Show/hide
Query:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
        S L  +LCRREPVRTLQFRTFSAY+E EIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNL+QQSV+LL+VKDPLFKRMGASRLARFSIDD++RMKI
Subjt:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI

Query:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        VE+GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEA GALHKAGAILVIKSTPDS ED K+NE+KSNL+KRF DLRYDVSS
Subjt:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

XP_022146798.1 uncharacterized protein LOC111015917 [Momordica charantia]2.2e-9197.81Show/hide
Query:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
        S L  YLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
Subjt:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI

Query:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAV ALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
Subjt:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

XP_022150134.1 uncharacterized protein LOC111018388 [Momordica charantia]1.9e-8794.94Show/hide
Query:  YLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGG
        YLCRREPVRTLQFRTFSAY ESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGD+LMQQSVALLQVKDPLFKRMGASRLARFSIDD+RRMKIVEMGG
Subjt:  YLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGG

Query:  AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKS P+SVED K+NE+KSNL+KRFEDLRYDVSS
Subjt:  AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

XP_038891777.1 uncharacterized protein LOC120081166 isoform X1 [Benincasa hispida]4.0e-8590.16Show/hide
Query:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
        S L  +LCRREPVRTLQFRTFSAY+E EIEKEAERKVGWLLKLIFAGTATF+GYQIFPYMGDNL+QQSV+LLQVKDPLFKRMGASRLARFSIDD+RRMKI
Subjt:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI

Query:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        VE+GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDS ED K+NE+KSNL+KRF DL YDVSS
Subjt:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

TrEMBL top hitse value%identityAlignment
A0A0A0KM85 Uncharacterized protein4.4e-8589.62Show/hide
Query:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
        S L  +LCRREPVRTLQFRTFSAY+E EIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNL+QQSV+LL+VKDPLFKRMGASRLARFSIDD++RMKI
Subjt:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI

Query:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        VE+GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEA GALHKAGAILVIKSTPDS ED K+NE+KSNL+KRF DLRYDVSS
Subjt:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

A0A1S3C4C9 uncharacterized protein LOC103496719 isoform X12.8e-8490.56Show/hide
Query:  FQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM
        FQ+LCRREPVRTLQFRTFSAY+E EIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNL+QQSV LL+VKDPLFKRMGASRLARFSIDDKRRMKIVE 
Subjt:  FQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM

Query:  GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        GGAQELLNML  AKDDRTRKEALKAL+AISHSDEAVG LHKAGAILVIKSTPDS ED K+NE+KSNL+KRF DLRYDVSS
Subjt:  GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

A0A6J1CZI6 uncharacterized protein LOC1110159171.1e-9197.81Show/hide
Query:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
        S L  YLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI
Subjt:  SLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKI

Query:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAV ALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
Subjt:  VEMGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

A0A6J1D932 uncharacterized protein LOC1110183889.4e-8894.94Show/hide
Query:  YLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGG
        YLCRREPVRTLQFRTFSAY ESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGD+LMQQSVALLQVKDPLFKRMGASRLARFSIDD+RRMKIVEMGG
Subjt:  YLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGG

Query:  AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKS P+SVED K+NE+KSNL+KRFEDLRYDVSS
Subjt:  AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

A0A6J1FNN3 uncharacterized protein LOC111447100 isoform X19.7e-8590Show/hide
Query:  FQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM
        FQ+LCRREP RTLQFR FSAY+E EIEKEAERKVGWLLKLIFAGTATFLGY IFPYMGDNL+QQSV+LLQVKDPLFKRMGASRLARFSIDD++RMKIVE+
Subjt:  FQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM

Query:  GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDS EDT++NE+KSNL+KRF DL YDVSS
Subjt:  GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G56210.1 ARM repeat superfamily protein1.6e-5561.9Show/hide
Query:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA
        R FS+ N+ +   +E+EAERK+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS++LL VKDPLFKRMGASRL+RF+IDD+RRMK+VEMGGAQELL+MLG+
Subjt:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA

Query:  AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        AKDD+TRKEALKAL A+S S EA   L   GA+ ++KSTP+S+ED+ ++ +KSN++++  +    VSS
Subjt:  AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

AT3G56210.2 ARM repeat superfamily protein1.6e-5561.9Show/hide
Query:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA
        R FS+ N+ +   +E+EAERK+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS++LL VKDPLFKRMGASRL+RF+IDD+RRMK+VEMGGAQELL+MLG+
Subjt:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA

Query:  AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        AKDD+TRKEALKAL A+S S EA   L   GA+ ++KSTP+S+ED+ ++ +KSN++++  +    VSS
Subjt:  AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

AT3G56210.4 ARM repeat superfamily protein1.6e-5561.9Show/hide
Query:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA
        R FS+ N+ +   +E+EAERK+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS++LL VKDPLFKRMGASRL+RF+IDD+RRMK+VEMGGAQELL+MLG+
Subjt:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA

Query:  AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        AKDD+TRKEALKAL A+S S EA   L   GA+ ++KSTP+S+ED+ ++ +KSN++++  +    VSS
Subjt:  AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS

AT3G56210.5 ARM repeat superfamily protein5.1e-5461.18Show/hide
Query:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA
        R FS+ N+ +   +E+EAERK+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS++LL VKDPLFKRMGASRL+RF+IDD+RRMK+VEMGGAQELL+MLG+
Subjt:  RTFSAYNESE---IEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEMGGAQELLNMLGA

Query:  AKDDRTRKEALKALHAISHS--DEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS
        AKDD+TRKEALKAL A+S S   EA   L   GA+ ++KSTP+S+ED+ ++ +KSN++++  +    VSS
Subjt:  AKDDRTRKEALKALHAISHS--DEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCATGGTTTTTTCCCCTTACTCGCTTCTGTTTCAGTATCTCTGCAGAAGAGAGCCTGTGCGGACCCTGCAATTTCGCACTTTTTCAGCTTACAACGAAAGCGAGATCGA
GAAGGAGGCTGAAAGAAAAGTAGGATGGTTATTGAAACTAATCTTTGCTGGGACTGCCACATTTCTGGGTTACCAGATTTTTCCATACATGGGGGATAACTTGATGCAGC
AATCTGTGGCGCTCTTGCAAGTCAAGGATCCATTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGTTTTTCGATAGACGATAAAAGAAGAATGAAAATAGTGGAGATG
GGTGGAGCTCAAGAGCTCTTAAACATGTTGGGGGCTGCCAAAGACGACCGCACGCGTAAGGAAGCTTTGAAGGCTTTACATGCCATCTCTCATTCAGATGAAGCTGTCGG
TGCTCTGCATAAAGCAGGGGCAATCTTGGTTATTAAATCTACTCCGGATTCGGTTGAAGATACGAAACTGAACGAGTTCAAGTCCAACCTAATAAAGAGATTTGAAGATC
TTAGATACGATGTCTCGTCT
mRNA sequenceShow/hide mRNA sequence
TCCATGGTTTTTTCCCCTTACTCGCTTCTGTTTCAGTATCTCTGCAGAAGAGAGCCTGTGCGGACCCTGCAATTTCGCACTTTTTCAGCTTACAACGAAAGCGAGATCGA
GAAGGAGGCTGAAAGAAAAGTAGGATGGTTATTGAAACTAATCTTTGCTGGGACTGCCACATTTCTGGGTTACCAGATTTTTCCATACATGGGGGATAACTTGATGCAGC
AATCTGTGGCGCTCTTGCAAGTCAAGGATCCATTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGTTTTTCGATAGACGATAAAAGAAGAATGAAAATAGTGGAGATG
GGTGGAGCTCAAGAGCTCTTAAACATGTTGGGGGCTGCCAAAGACGACCGCACGCGTAAGGAAGCTTTGAAGGCTTTACATGCCATCTCTCATTCAGATGAAGCTGTCGG
TGCTCTGCATAAAGCAGGGGCAATCTTGGTTATTAAATCTACTCCGGATTCGGTTGAAGATACGAAACTGAACGAGTTCAAGTCCAACCTAATAAAGAGATTTGAAGATC
TTAGATACGATGTCTCGTCT
Protein sequenceShow/hide protein sequence
SMVFSPYSLLFQYLCRREPVRTLQFRTFSAYNESEIEKEAERKVGWLLKLIFAGTATFLGYQIFPYMGDNLMQQSVALLQVKDPLFKRMGASRLARFSIDDKRRMKIVEM
GGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSVEDTKLNEFKSNLIKRFEDLRYDVSS