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MS020827 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020827
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297
Genome locationscaffold1172:51504..51755
RNA-Seq ExpressionMS020827
SyntenyMS020827
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.4e-0741.67Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CFRCDEKF+S H C+  EL ++   ++ED   + +E   +G+E + K  E      ++    A LSLNS+VGL+SP+T+KI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

KAE8647113.1 hypothetical protein Csa_021721 [Cucumis sativus]1.5e-0740.48Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CFRCDEKF+ GH C+  EL +++  + ED +   D++    + N NKE  T++           LS+NS+VG NSP+T+KI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

RVW43654.1 Hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera]7.4e-0744.05Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CF+CDEKF+ GHHC++ EL+V+L H+ E++           ++N   +  TE   L   K   ELSLNS+VGL +P TMKI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

RVX08292.1 Heavy metal-associated isoprenylated plant protein 46 [Vitis vinifera]5.7e-0745.24Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CF+CDEKF+ GH C++ EL+V+L H+ ED+           ++N      TE   L   K   ELSLNSMVGL +P TMKI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

XP_010541181.1 PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]3.3e-0747.06Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGE-AELSLNSMVGLNSPRTMKI
        K +CFRCDEKF  GH C++ ELQV+L           +EI   G+E + +++     R D  +GE AELSLNS+VGL SP+T+KI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGE-AELSLNSMVGLNSPRTMKI

TrEMBL top hitse value%identityAlignment
A0A087HFG5 Reverse transcriptase domain-containing protein1.4e-0641.67Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        + +CFRCDEK+   HHC   EL VM+  ++  D    +E     DE D+ EE   +  +      A LSLNS+VG++SPRTMK+
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

A0A438E7P0 Hydroxymethylglutaryl-CoA lyase3.6e-0744.05Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CF+CDEKF+ GHHC++ EL+V+L H+ E++           ++N   +  TE   L   K   ELSLNS+VGL +P TMKI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

A0A438JH68 Heavy metal-associated isoprenylated plant protein 462.8e-0745.24Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CF+CDEKF+ GH C++ EL+V+L H+ ED+           ++N      TE   L   K   ELSLNSMVGL +P TMKI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

A0A5C7IJS7 Uncharacterized protein6.1e-0740.24Show/hide
Query:  MCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        +C+RCDEK++ GH C++ EL V++ +D+ED+   P+E P++ D     E   E   +       E+SLNS+VGL +P+TMK+
Subjt:  MCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

A0A5D3CTU6 Ty3-gypsy retrotransposon protein3.6e-0741.67Show/hide
Query:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI
        K +CFRCDEKF+S H C+  EL ++   ++ED   + +E   +G+E + K  E      ++    A LSLNS+VGL+SP+T+KI
Subjt:  KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAGTATGTGCTTTAGGTGCGATGAAAAGTTTACATCGGGACACCACTGCCAAGAATGGGAACTACAAGTGATGTTATTTCACGATAAGGAAGATGACGCTACAATGCC
AGACGAGATCCCTATGCTTGGGGACGAGAATGACAACAAAGAGGAAGAGACTGAATTAAAAAGATTGGACCTACGTAAGGGAGAGGCCGAGTTATCACTAAATTCCATGG
TAGGATTGAACTCCCCAAGAACCATGAAAATT
mRNA sequenceShow/hide mRNA sequence
AAGAGTATGTGCTTTAGGTGCGATGAAAAGTTTACATCGGGACACCACTGCCAAGAATGGGAACTACAAGTGATGTTATTTCACGATAAGGAAGATGACGCTACAATGCC
AGACGAGATCCCTATGCTTGGGGACGAGAATGACAACAAAGAGGAAGAGACTGAATTAAAAAGATTGGACCTACGTAAGGGAGAGGCCGAGTTATCACTAAATTCCATGG
TAGGATTGAACTCCCCAAGAACCATGAAAATT
Protein sequenceShow/hide protein sequence
KSMCFRCDEKFTSGHHCQEWELQVMLFHDKEDDATMPDEIPMLGDENDNKEEETELKRLDLRKGEAELSLNSMVGLNSPRTMKI