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MS020831 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020831
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold1172:78168..78347
RNA-Seq ExpressionMS020831
SyntenyMS020831
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055625.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0852.54Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQL-DPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        ERLK+ +  T++ NQ +F++GRQ+ D +LI NE + Y+R+KK +G+ +KLDLEKAFDK+
Subjt:  ERLKKVISSTISMNQSSFIEGRQL-DPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

KAA0056336.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-1064.41Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        +RLKKV+ S I++ QS+ IEG Q LDP LI NE+V+ YR K+K+GW LKLDLEKAFD+V
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

TYK06397.1 hypothetical protein E5676_scaffold163G00940 [Cucumis melo var. makuwa]1.1e-0964.41Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        +RLK V+ S  S  Q+ FIEGRQ LDP+ I NE V+ YR KKK+GW LKLDLEKAFD+V
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

XP_038903533.1 uncharacterized protein LOC120090100 [Benincasa hispida]7.9e-1164.41Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        ERLK V+ S I+ +QS+F EGRQ LDP+LI NE V+ YR+KKK+GW LKLD+EKAF++V
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

XP_038905468.1 probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Benincasa hispida]4.6e-1169.49Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        ERLKKV+ S IS  QS+FIEGRQ LDP+LI NE V++YR KKK+ W LKLDLEKAF +V
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

TrEMBL top hitse value%identityAlignment
A0A5A7TAQ1 LINE-1 retrotransposable element ORF2 protein8.0e-0950.85Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        ERLK+ + ST++ NQ +F++GRQ +D +L+ NE + Y+R+KK +G+ +KLD+EKAFDK+
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

A0A5A7UPV1 Reverse transcriptase1.1e-1064.41Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        +RLKKV+ S I++ QS+ IEG Q LDP LI NE+V+ YR K+K+GW LKLDLEKAFD+V
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

A0A5A7UPV6 LINE-1 retrotransposable element ORF2 protein8.0e-0952.54Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQL-DPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        ERLK+ +  T++ NQ +F++GRQ+ D +LI NE + Y+R+KK +G+ +KLDLEKAFDK+
Subjt:  ERLKKVISSTISMNQSSFIEGRQL-DPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

A0A5D3C3J5 Reverse transcriptase domain-containing protein5.5e-1064.41Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        +RLK V+ S  S  Q+ FIEGRQ LDP+ I NE V+ YR KKK+GW LKLDLEKAFD+V
Subjt:  ERLKKVISSTISMNQSSFIEGRQ-LDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

A0A5D3CGJ3 LINE-1 retrotransposable element ORF2 protein8.0e-0952.54Show/hide
Query:  ERLKKVISSTISMNQSSFIEGRQL-DPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV
        ERLK+ +  T++ NQ +F++GRQ+ D +LI NE + Y+R+KK +G+ +KLDLEKAFDK+
Subjt:  ERLKKVISSTISMNQSSFIEGRQL-DPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases4.8e-0646.77Show/hide
Query:  IERLKKVISSTISMNQSSFIEGR-QLDPLLIVNEVVKYYRIKK-KRGW-YLKLDLEKAFDKV
        +ERLK ++++ I   Q+SFI GR   D ++ V E V   R KK  +GW  LKLDLEKA+D++
Subjt:  IERLKKVISSTISMNQSSFIEGR-QLDPLLIVNEVVKYYRIKK-KRGW-YLKLDLEKAFDKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATATAGAGCGCCTTAAAAAAGTAATTTCTAGCACTATTTCCATGAATCAAAGTTCCTTTATTGAAGGAAGACAATTAGATCCATTATTAATAGTAAATGAAGTTGTGAA
ATATTATAGAATTAAAAAGAAGAGAGGATGGTATTTAAAGCTGGATTTAGAGAAAGCTTTTGATAAGGTG
mRNA sequenceShow/hide mRNA sequence
CATATAGAGCGCCTTAAAAAAGTAATTTCTAGCACTATTTCCATGAATCAAAGTTCCTTTATTGAAGGAAGACAATTAGATCCATTATTAATAGTAAATGAAGTTGTGAA
ATATTATAGAATTAAAAAGAAGAGAGGATGGTATTTAAAGCTGGATTTAGAGAAAGCTTTTGATAAGGTG
Protein sequenceShow/hide protein sequence
HIERLKKVISSTISMNQSSFIEGRQLDPLLIVNEVVKYYRIKKKRGWYLKLDLEKAFDKV