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MS020832 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020832
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold1172:78775..79083
RNA-Seq ExpressionMS020832
SyntenyMS020832
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159051.1 uncharacterized protein LOC111025493 [Momordica charantia]1.4e-1045.1Show/hide
Query:  FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKR
        F  KL ++       S + EK+ K  +  I+ +IS +D   K  G+S  +   R SL+KDLLN+ IK+E+ LIQ+ K+QWLKEGDE S FFHR L   KR
Subjt:  FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKR

Query:  KS
        K+
Subjt:  KS

XP_038884535.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]1.4e-1042Show/hide
Query:  SKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS
        S+LR ++ S K+W  ++EK  K  EE+++ EI   D     +    +E   R SLK DLL+L   +E++LIQKSK+ WL  GDE ++FFHR+L  ++RK+
Subjt:  SKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS

XP_038884536.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]1.4e-1042Show/hide
Query:  SKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS
        S+LR ++ S K+W  ++EK  K  EE+++ EI   D     +    +E   R SLK DLL+L   +E++LIQKSK+ WL  GDE ++FFHR+L  ++RK+
Subjt:  SKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS

XP_038884537.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]1.4e-1042Show/hide
Query:  SKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS
        S+LR ++ S K+W  ++EK  K  EE+++ EI   D     +    +E   R SLK DLL+L   +E++LIQKSK+ WL  GDE ++FFHR+L  ++RK+
Subjt:  SKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS

XP_038904301.1 uncharacterized protein LOC120090656 [Benincasa hispida]2.0e-0940.95Show/hide
Query:  SSKLRNLRMSFKQWSFQNEKKHKEEEENIISEI----SLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIP
        S+ LR  + + K+W  +  K+ K +EE++++E+    SL  +    + +  + Y    SLK DLL L   +EK+LIQK K++WLKEGDE ++FFHR+L  
Subjt:  SSKLRNLRMSFKQWSFQNEKKHKEEEENIISEI----SLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIP

Query:  RKRKS
        RKRK+
Subjt:  RKRKS

TrEMBL top hitse value%identityAlignment
A0A151QNL1 Putative ribonuclease H protein At1g65750 family5.8e-0732Show/hide
Query:  KLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKSE
        KL+ L+++ K+W+ ++ K  K EE  ++ E++ +D   +   ++  E + +C L +   +  I++E    QKS+ QW+KEGD  + FFH  +  R RK+E
Subjt:  KLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKSE

A0A151QYX4 Transposon TX1 uncharacterized1.7e-0629.29Show/hide
Query:  KLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS
        KLR L+   K W+ ++ +  +  ++ I+ +++ +D+  + +G+S  E  +R  L+ +   + I++E  L Q+S+++WLKEGD  + FFH  +  R++K+
Subjt:  KLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS

A0A392MRH1 Transposon TX1 putative 149 kDa protein (Fragment)1.3e-0630.3Show/hide
Query:  KLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS
        KL+ L+   K+W+ Q+      + E +ISEIS++D   + +G+S  E   R ++  ++ +L +  E  ++Q+S+ +WL+EGD  S++FH  +  R++++
Subjt:  KLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKS

A0A6J1E2R6 uncharacterized protein LOC1110254936.6e-1145.1Show/hide
Query:  FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKR
        F  KL ++       S + EK+ K  +  I+ +IS +D   K  G+S  +   R SL+KDLLN+ IK+E+ LIQ+ K+QWLKEGDE S FFHR L   KR
Subjt:  FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKR

Query:  KS
        K+
Subjt:  KS

A5C543 Uncharacterized protein9.8e-0733.66Show/hide
Query:  FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKR
        F  KL+ ++   K+W+  + +  KE +++I+SEI+ ID A +   +SP   A+R   K +L  L +++E +  QK++++W+KEGD  S FFH+    R+ 
Subjt:  FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKR

Query:  K
        +
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCTCTTCAAAGCTCAGGAATCTCAGAATGTCTTTTAAGCAATGGAGTTTTCAAAATGAAAAGAAACACAAAGAAGAGGAAGAGAATATTATTTCAGAAATATCTTTAAT
TGATGAGGCTGGAAAATTTATGGGTATTTCTCCGTCTGAGTATGCAGAGAGATGCTCTTTAAAGAAAGACTTATTGAATTTATGCATAAAGGACGAGAAGAATTTGATTC
AGAAATCTAAGATACAATGGCTAAAAGAAGGAGATGAATATAGTAACTTTTTTCATAGATACTTGATTCCTCGAAAAAGAAAATCTGAA
mRNA sequenceShow/hide mRNA sequence
TTCTCTTCAAAGCTCAGGAATCTCAGAATGTCTTTTAAGCAATGGAGTTTTCAAAATGAAAAGAAACACAAAGAAGAGGAAGAGAATATTATTTCAGAAATATCTTTAAT
TGATGAGGCTGGAAAATTTATGGGTATTTCTCCGTCTGAGTATGCAGAGAGATGCTCTTTAAAGAAAGACTTATTGAATTTATGCATAAAGGACGAGAAGAATTTGATTC
AGAAATCTAAGATACAATGGCTAAAAGAAGGAGATGAATATAGTAACTTTTTTCATAGATACTTGATTCCTCGAAAAAGAAAATCTGAA
Protein sequenceShow/hide protein sequence
FSSKLRNLRMSFKQWSFQNEKKHKEEEENIISEISLIDEAGKFMGISPSEYAERCSLKKDLLNLCIKDEKNLIQKSKIQWLKEGDEYSNFFHRYLIPRKRKSE