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MS020843 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020843
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold1172:254393..254554
RNA-Seq ExpressionMS020843
SyntenyMS020843
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]6.7e-0951.85Show/hide
Query:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WDSSVP +C+ C  G+ES+DHLFF CPF  +VW+ +L  + SSH+I +W  +L
Subjt:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]2.2e-1262.26Show/hide
Query:  QWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WD SV  +C+FC G ES D+LFFECPFS EVW+ M+ W GSS +ISYW T+L
Subjt:  QWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]6.7e-1768.52Show/hide
Query:  RQWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        RQW++ VP TC+FCAGLES+DHLF +CP+SR VWAGM+ W GSSH++SYW T+L
Subjt:  RQWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]1.2e-1055.56Show/hide
Query:  QWDSSVPFTCMFCAG-LESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        QWD S+P +CM C G  ES+DHLFF CPF  E+W+ +LL++ SSH+I YW  +L
Subjt:  QWDSSVPFTCMFCAG-LESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

XP_031737556.1 uncharacterized protein LOC116402448 [Cucumis sativus]2.3e-0951.85Show/hide
Query:  QWDSSVPFTCMFCA-GLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WDSS+P +C+ C    ES+DHLFF CPF  E+W+ +LL++ SSH+I YW  +L
Subjt:  QWDSSVPFTCMFCA-GLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932253.2e-0951.85Show/hide
Query:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WDSSVP +C+ C  G+ES+DHLFF CPF  +VW+ +L  + SSH+I +W  +L
Subjt:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

A0A5A7UP65 Reverse transcriptase3.2e-0951.85Show/hide
Query:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WDSSVP +C+ C  G+ES+DHLFF CPF  +VW+ +L  + SSH+I +W  +L
Subjt:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

A0A5D3D7P6 Reverse transcriptase3.2e-0951.85Show/hide
Query:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WDSSVP +C+ C  G+ES+DHLFF CPF  +VW+ +L  + SSH+I +W  +L
Subjt:  QWDSSVPFTCMFC-AGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

A0A6J1DTG0 uncharacterized protein LOC1110241651.1e-1262.26Show/hide
Query:  QWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        +WD SV  +C+FC G ES D+LFFECPFS EVW+ M+ W GSS +ISYW T+L
Subjt:  QWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

A0A6J1E271 uncharacterized protein LOC1110253243.2e-1768.52Show/hide
Query:  RQWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL
        RQW++ VP TC+FCAGLES+DHLF +CP+SR VWAGM+ W GSSH++SYW T+L
Subjt:  RQWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.8e-0551.43Show/hide
Query:  RQWDSSVPFTCMFC-AGLESQDHLFFECPFSREVW
        R W  S+P  C+ C +  ES+ HLFFECPF   VW
Subjt:  RQWDSSVPFTCMFC-AGLESQDHLFFECPFSREVW

AT1G45063.1 copper ion binding;electron carriers1.6e-0550Show/hide
Query:  WDSSVPFTCMFCAGL-ESQDHLFFECPFSREVWA
        W   VP  C+ C  L E++ H+FF+CPFS EVW+
Subjt:  WDSSVPFTCMFCAGL-ESQDHLFFECPFSREVWA

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.0e-0448.48Show/hide
Query:  WDSSVPFTCMFC-AGLESQDHLFFECPFSREVW
        W    P  C+FC    E++ HLFF+C F+REVW
Subjt:  WDSSVPFTCMFC-AGLESQDHLFFECPFSREVW

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.3e-0448.57Show/hide
Query:  RQWDSSVPFTCMFC-AGLESQDHLFFECPFSREVW
        + W  S+P  C+ C A  +S+ HLFFEC FS  VW
Subjt:  RQWDSSVPFTCMFC-AGLESQDHLFFECPFSREVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGCCAATGGGACTCATCGGTTCCTTTTACCTGCATGTTTTGTGCTGGTTTAGAGTCTCAGGATCATCTTTTCTTTGAGTGCCCTTTTAGTAGGGAGGTTTGGGCTGGCAT
GCTTCTGTGGGTTGGATCGTCGCATCAGATTTCCTACTGGTATACTAAGCTT
mRNA sequenceShow/hide mRNA sequence
CGCCAATGGGACTCATCGGTTCCTTTTACCTGCATGTTTTGTGCTGGTTTAGAGTCTCAGGATCATCTTTTCTTTGAGTGCCCTTTTAGTAGGGAGGTTTGGGCTGGCAT
GCTTCTGTGGGTTGGATCGTCGCATCAGATTTCCTACTGGTATACTAAGCTT
Protein sequenceShow/hide protein sequence
RQWDSSVPFTCMFCAGLESQDHLFFECPFSREVWAGMLLWVGSSHQISYWYTKL