; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020845 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020845
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1172:314064..314465
RNA-Seq ExpressionMS020845
SyntenyMS020845
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO86337.1 reverse transcriptase [Corchorus capsularis]3.7e-2442.28Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELL---------NSYKWGGKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN
        LKLD+SKAYD+VEW FLE +ML++GF   W  L+M C+  +         N+ K+   R   + DPLSPYLFL  +EGLS  L  A        +++N  
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELL---------NSYKWGGKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P ISHLFFVD++++F +A+  +C  +  +LR++  A GQ +N  K+AI
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

XP_021762976.1 uncharacterized protein LOC110727703 [Chenopodium quinoa]2.5e-2547.65Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCI-ELLNSYKWGGK--------RKHYRRDPLSPYLFLLRVEGLSSSLV-AAHISLNS------N
        LKLDMSKAYD+VEW FLE++M + GF   WV  IMDC+  +  S+KW GK        R   + DP+SPYLFL+  E  SS LV AA+ +L S       
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCI-ELLNSYKWGGK--------RKHYRRDPLSPYLFLLRVEGLSSSLV-AAHISLNS------N

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P ISH+FF D++++F +A   +CS+I  I+  YERA GQ INF K+ +
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

XP_030939190.1 uncharacterized protein LOC115964041 [Quercus lobata]4.8e-2447.65Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAA-------HISLNSN
        LKLDMSKAYD+VEW F+EK+M +MGF + WVDL+M+CI       L+N    G     R   + DPLSPYLFL+  EGL   +  A        +SL  N
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAA-------HISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P ++HL FVD++LIF KA   +C ++  IL  YERA GQ IN +KT +
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

XP_030939975.1 uncharacterized protein LOC115964883 [Quercus lobata]2.8e-2446.98Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWGG---KRKHYRRDPLSPYLFLLRVEGLSSSLVAAHI-------SLNSN
        +KLDMSKAYD+VEW FLEK+M ++GF + W+ L+  CI       L+N    G     R   + DPLSPYLFLL  EGL S +  A I       SL S 
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWGG---KRKHYRRDPLSPYLFLLRVEGLSSSLVAAHI-------SLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P +SHLFF D++L+F +AN+ + S I  IL++YE A GQ IN  KT +
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

XP_038708495.1 uncharacterized protein LOC120003549 [Tripterygium wilfordii]4.8e-2444.9Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWGG---KRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN
        LKL MSKAYD+VEW F+E +M+++GF+  WV LIM C+       L+N   +G     R   + DPLS +LFL   EGLS+ LV A        +  + N
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWGG---KRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKT
         P ++HLFF D++L+F KAN  +C  +H +L+ YERA GQ INF K+
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKT

TrEMBL top hitse value%identityAlignment
A0A2N9EVK9 Reverse transcriptase domain-containing protein2.5e-2651.01Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN
        LKLDMSKAYD+VEW FLEKIM QMGF+  W+ L+ +CI       L+N    G     R   + DPLSPYLFLL  EGL S +  A        ISL   
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P I+HLFF D++L+F KA    C +I  IL  YERA GQ IN  KTAI
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

A0A2N9F4S2 Reverse transcriptase domain-containing protein8.5e-2747.65Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELLN-SYKWGGKRKHY--------RRDPLSPYLFLLRVEGLSSSLVAAHIS-------LNSN
        LKLDMSKAYD+VEW FLEKIM+ MGF+  WV L+M+C++ ++ S    G+ K Y        + DPLSPYLFLL  EGL + L  A IS       ++  
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELLN-SYKWGGKRKHY--------RRDPLSPYLFLLRVEGLSSSLVAAHIS-------LNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P ++HLFF D++++F +A  ++C+ I  ILR+YERA GQ IN  KT +
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

A0A2N9GIC4 Reverse transcriptase domain-containing protein1.0e-2750.34Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN
        LKLDMSKAYD+VEWCFLEKIM QMGF+  W+ ++++CI       L+N    G     R   + DPLSPYLFLL  EGL S +  A+       ISL  N
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P ISHLFF D++L+F KA    C +I  IL +YE+A GQ +N  KT I
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

A0A2N9HCI6 Reverse transcriptase domain-containing protein1.5e-2650.34Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN
        LKLDMSKAYD+VEW FLEKIM Q+GF+H W+ LI +CI       L+N    G     R   + DPLSPYLFLL  EGL S +  A        ISL   
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIE------LLNSYKWG---GKRKHYRRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P I+HLFF D++L+F KA A  C +I  IL +YE A GQ +N  KT I
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

A0A2N9I7P8 Uncharacterized protein2.5e-2650.34Show/hide
Query:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELLN-SYKWGGKRKHY--------RRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN
        LKLDMSKAYD+VEW FLEKIM QMGF+  W+ L+ +CI  ++ S    G+   Y        + DPLSPYLFLL  EGL S +  A        ISL   
Subjt:  LKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELLN-SYKWGGKRKHY--------RRDPLSPYLFLLRVEGLSSSLVAAH-------ISLNSN

Query:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI
         P I+HLFF D++L+F KA    C +I  IL  YERA GQ IN  KTAI
Subjt:  CPNISHLFFVDNNLIFFKANALKCSQIHCILREYERAFGQSINFSKTAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACACTTAAATTAGACATGAGCAAAGCCTATGATCAAGTAGAATGGTGCTTTCTTGAGAAGATTATGCTTCAAATGGGTTTTTATCATACTTGGGTTGATTTGATTATGGA
TTGTATTGAGCTTCTCAATTCTTATAAATGGGGTGGCAAGAGGAAACATTATCGAAGGGATCCCCTTTCGCCGTACTTATTCTTATTACGCGTGGAGGGCCTGTCTTCCT
CGTTGGTTGCAGCTCACATATCACTTAATAGCAATTGCCCCAACATCTCTCATCTTTTCTTCGTGGATAACAACCTTATCTTTTTCAAGGCCAATGCGCTAAAGTGTTCA
CAAATTCATTGCATTCTTCGAGAATATGAGAGAGCGTTTGGCCAAAGCATAAATTTCTCAAAAACAGCAATT
mRNA sequenceShow/hide mRNA sequence
ACACTTAAATTAGACATGAGCAAAGCCTATGATCAAGTAGAATGGTGCTTTCTTGAGAAGATTATGCTTCAAATGGGTTTTTATCATACTTGGGTTGATTTGATTATGGA
TTGTATTGAGCTTCTCAATTCTTATAAATGGGGTGGCAAGAGGAAACATTATCGAAGGGATCCCCTTTCGCCGTACTTATTCTTATTACGCGTGGAGGGCCTGTCTTCCT
CGTTGGTTGCAGCTCACATATCACTTAATAGCAATTGCCCCAACATCTCTCATCTTTTCTTCGTGGATAACAACCTTATCTTTTTCAAGGCCAATGCGCTAAAGTGTTCA
CAAATTCATTGCATTCTTCGAGAATATGAGAGAGCGTTTGGCCAAAGCATAAATTTCTCAAAAACAGCAATT
Protein sequenceShow/hide protein sequence
TLKLDMSKAYDQVEWCFLEKIMLQMGFYHTWVDLIMDCIELLNSYKWGGKRKHYRRDPLSPYLFLLRVEGLSSSLVAAHISLNSNCPNISHLFFVDNNLIFFKANALKCS
QIHCILREYERAFGQSINFSKTAI