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MS020849 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020849
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold1172:347363..347716
RNA-Seq ExpressionMS020849
SyntenyMS020849
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYR53539.1 hypothetical protein Ahy_A06g028711 [Arachis hypogaea]3.7e-1240.57Show/hide
Query:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL
        F   +L  +LPKG   P   KYDG+ DP +H+T++   +   G  NA +CR F  TL GPA +WF  L   SIA++ D+ARKF+ QF            L
Subjt:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL

Query:  MSVRQK
        + V QK
Subjt:  MSVRQK

RYR67043.1 hypothetical protein Ahy_A03g013281 [Arachis hypogaea]5.7e-1341.51Show/hide
Query:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL
        FM  +L  +LPKG   P   KYDG+ DP +H+T++   +   G ++A +CR F  TL GPA +WF  L   SIAS+ D+ARKF+ QF            L
Subjt:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL

Query:  MSVRQK
        + V QK
Subjt:  MSVRQK

WP_215201731.1 retrotransposon gag domain-containing protein, partial [Escherichia coli]2.0e-1337.27Show/hide
Query:  TQESFMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWT
        T+  F   VLA  +P+  +G  I  Y+G TDP +H + Y +++   G ++   CR F  TL GPA++WF  L +  I S+Q+LA++F+ QF      R  
Subjt:  TQESFMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWT

Query:  KTHLMSVRQK
         +HL+++RQK
Subjt:  KTHLMSVRQK

XP_015935350.1 uncharacterized protein LOC107461388 [Arachis duranensis]3.7e-1239.62Show/hide
Query:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL
        FM  +L  +LP+G   P   KYDG+ +P +H+T++   +   G ++A QCR F  TL GPA +WF  L   SIAS+ D+ RKF+ QF            L
Subjt:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL

Query:  MSVRQK
        + V QK
Subjt:  MSVRQK

XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]1.7e-1243.43Show/hide
Query:  ELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHLMSVRQKA
        ++P   K P I KYDGSTDP+DH+  YH+     G   A +CR FS TL G    WFQ L + SI+S+++LAR FV QF   +       +L++++QKA
Subjt:  ELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHLMSVRQKA

TrEMBL top hitse value%identityAlignment
A0A445C1A3 Retrotrans_gag domain-containing protein1.8e-1245.98Show/hide
Query:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQF
        F   VL  +LPKG   P   KYDG+ DP +H+T++   +   G  +A +CR F  TL GPA +WF  L   SIAS+ D+ARKF+ QF
Subjt:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQF

A0A445CRE9 Retrotrans_gag domain-containing protein1.8e-1240.57Show/hide
Query:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL
        F   +L  +LPKG   P   KYDG+ DP +H+T++   +   G  NA +CR F  TL GPA +WF  L   SIA++ D+ARKF+ QF            L
Subjt:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL

Query:  MSVRQK
        + V QK
Subjt:  MSVRQK

A0A445DV44 Peptidase A2 domain-containing protein2.8e-1341.51Show/hide
Query:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL
        FM  +L  +LPKG   P   KYDG+ DP +H+T++   +   G ++A +CR F  TL GPA +WF  L   SIAS+ D+ARKF+ QF            L
Subjt:  FMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL

Query:  MSVRQK
        + V QK
Subjt:  MSVRQK

A0A5B7BFG6 Retrotrans_gag domain-containing protein (Fragment)1.1e-1235.96Show/hide
Query:  LLKITQESFMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYI
        LL +T+  F+  ++  ELP+    P+ ++YDG TDP DH++ Y   +   G  +A  CR F+ +L G A  WF++L   S++S+ DL+ KF N+F  S  
Subjt:  LLKITQESFMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYI

Query:  NRWTKTHLMSVRQK
         R    +L+++RQ+
Subjt:  NRWTKTHLMSVRQK

A0A6J1D3B7 uncharacterized protein LOC1110166198.1e-1343.43Show/hide
Query:  ELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHLMSVRQKA
        ++P   K P I KYDGSTDP+DH+  YH+     G   A +CR FS TL G    WFQ L + SI+S+++LAR FV QF   +       +L++++QKA
Subjt:  ELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHLMSVRQKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGAACTTTTGAAGATCACTCAAGAATCATTCATGGCCAGCGTCCTGGCCGTGGAGCTCCCAAAAGGACTCAAAGGCCCGCAGATTGATAAATATGACGGATCTACTGA
CCCCATGGATCATGTCACCTCTTACCATGATGCAATTAGGCAGGCGGGGTACAACAATGCTCAACAGTGTCGGGACTTCTCCGGAACCCTCGTTGGCCCAGCTTGGCAAT
GGTTCCAAAACCTCCATCAGTATTCCATCGCAAGTTACCAGGATCTCGCTCGCAAATTCGTCAACCAGTTCCATTACTCCTACATTAATCGATGGACAAAGACGCATCTC
ATGTCCGTAAGGCAGAAAGCCAAC
mRNA sequenceShow/hide mRNA sequence
TATGAACTTTTGAAGATCACTCAAGAATCATTCATGGCCAGCGTCCTGGCCGTGGAGCTCCCAAAAGGACTCAAAGGCCCGCAGATTGATAAATATGACGGATCTACTGA
CCCCATGGATCATGTCACCTCTTACCATGATGCAATTAGGCAGGCGGGGTACAACAATGCTCAACAGTGTCGGGACTTCTCCGGAACCCTCGTTGGCCCAGCTTGGCAAT
GGTTCCAAAACCTCCATCAGTATTCCATCGCAAGTTACCAGGATCTCGCTCGCAAATTCGTCAACCAGTTCCATTACTCCTACATTAATCGATGGACAAAGACGCATCTC
ATGTCCGTAAGGCAGAAAGCCAAC
Protein sequenceShow/hide protein sequence
YELLKITQESFMASVLAVELPKGLKGPQIDKYDGSTDPMDHVTSYHDAIRQAGYNNAQQCRDFSGTLVGPAWQWFQNLHQYSIASYQDLARKFVNQFHYSYINRWTKTHL
MSVRQKAN