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MS020865 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020865
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold382:78866..79105
RNA-Seq ExpressionMS020865
SyntenyMS020865
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU21788.1 hypothetical protein TSUD_329120, partial [Trifolium subterraneum]1.3e-1351.28Show/hide
Query:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        KLGN +GTFE++D  ES R  G  LR+RV +D+ KPL+RG KLN  G    + +  +YERLP+F F CGR+ H ++DC
Subjt:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]1.3e-1350Show/hide
Query:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        KLGN+LGTFE++D  +  R  G  LRIRV++D+ KPL+RG KL+  G    + +  +YERLP+F F CGR+ H ++DC
Subjt:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]7.5e-2565.38Show/hide
Query:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        +LGN +G FEDV+ + +  CWGS LR+RV  D+ KPL RGIKLNLDGPMGG  IPIQYERLPDF ++CGR++H +KDC
Subjt:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]7.5e-2564.56Show/hide
Query:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        ++LGN +G F DVDC+E    WG+SLRIRV +DI+KPLRRGIK+N+DGPMGG  IPIQYERLPDF ++CG + H+  DC
Subjt:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.7e-2271.43Show/hide
Query:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCG
        ++LGN LG FE+ DCD+    WGS+LR+RV LDISKPLRRGIKLNLDGP+GG  IPIQYERLPDF ++CG
Subjt:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCG

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like6.5e-1450Show/hide
Query:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        KLGN+LGTFE++D  +  R  G  LRIRV++D+ KPL+RG KL+  G    + +  +YERLP+F F CGR+ H ++DC
Subjt:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

A0A2Z6LV25 Uncharacterized protein (Fragment)6.5e-1451.28Show/hide
Query:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        KLGN +GTFE++D  ES R  G  LR+RV +D+ KPL+RG KLN  G    + +  +YERLP+F F CGR+ H ++DC
Subjt:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

A0A6J1BSZ1 uncharacterized protein LOC1110054813.6e-2565.38Show/hide
Query:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        +LGN +G FEDV+ + +  CWGS LR+RV  D+ KPL RGIKLNLDGPMGG  IPIQYERLPDF ++CGR++H +KDC
Subjt:  KLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

A0A6J1DU55 uncharacterized protein LOC1110231353.6e-2564.56Show/hide
Query:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC
        ++LGN +G F DVDC+E    WG+SLRIRV +DI+KPLRRGIK+N+DGPMGG  IPIQYERLPDF ++CG + H+  DC
Subjt:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC

A0A6J1DX30 uncharacterized protein LOC1110248741.3e-2271.43Show/hide
Query:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCG
        ++LGN LG FE+ DCD+    WGS+LR+RV LDISKPLRRGIKLNLDGP+GG  IPIQYERLPDF ++CG
Subjt:  LKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGCTCAAGTTAGGAAATGTTCTGGGAACCTTCGAAGATGTTGACTGTGATGAATCAGTCCGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACTCTGGACATATCCAA
ACCCCTTAGAAGAGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTAAGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTATTTTTACTGTGGTAGGGTGA
ACCATACTATCAAGGATTGT
mRNA sequenceShow/hide mRNA sequence
GTGCTCAAGTTAGGAAATGTTCTGGGAACCTTCGAAGATGTTGACTGTGATGAATCAGTCCGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACTCTGGACATATCCAA
ACCCCTTAGAAGAGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTAAGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTATTTTTACTGTGGTAGGGTGA
ACCATACTATCAAGGATTGT
Protein sequenceShow/hide protein sequence
VLKLGNVLGTFEDVDCDESVRCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVKIPIQYERLPDFYFYCGRVNHTIKDC