; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020869 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020869
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMYB transcription factor
Genome locationscaffold382:147878..148096
RNA-Seq ExpressionMS020869
SyntenyMS020869
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010260471.1 PREDICTED: myb-related protein 3R-1-like [Nelumbo nucifera]1.5e-3289.04Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPFSEEEEERL+AAHR+HGNKWALIARLFPGRTDNAVKNHWHV++ARKHR+  K+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

XP_010270380.1 PREDICTED: transcription factor MYB23 [Nelumbo nucifera]2.0e-3290.41Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPF+EEEEERL+AAHRIHGNKWALIARLFPGRTDNAVKNHWHVI+ARKHR+  K+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

XP_015575349.1 transcription factor MYB44 [Ricinus communis]2.0e-3291.78Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPFSEEEEERL+AAHR HGNKWALIARLFPGRTDNAVKNHWHVI+ARK R+H KI
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

XP_021902733.1 transcription factor MYB117-like [Carica papaya]1.5e-3293.06Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFK
        GKSCRLRWFNQLDPRINRRPFSEEEEERL+AAHRIHGNKWALIARLFPGRTDNAVKNHWHVI+ARKH+Q  K
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFK

XP_022153715.1 transcription factor MYB52-like [Momordica charantia]3.3e-3598.63Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARL PGRTDNAVKNHWHVIIARKHRQHFKI
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

TrEMBL top hitse value%identityAlignment
A0A1U8A2L0 myb-related protein 3R-1-like7.4e-3389.04Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPFSEEEEERL+AAHR+HGNKWALIARLFPGRTDNAVKNHWHV++ARKHR+  K+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

A0A1U8AR74 transcription factor MYB239.7e-3390.41Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPF+EEEEERL+AAHRIHGNKWALIARLFPGRTDNAVKNHWHVI+ARKHR+  K+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

A0A6A6M0M7 Uncharacterized protein9.7e-3390.41Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPF+EEEEERL+AAHRIHGNKWALIARLFPGRTDNAVKNHWHVI+ARK R+ FK+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

A0A6J1DHL3 transcription factor MYB52-like1.6e-3598.63Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARL PGRTDNAVKNHWHVIIARKHRQHFKI
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

B9S2N1 R2r3-myb transcription factor, putative9.7e-3391.78Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINRRPFSEEEEERL+AAHR HGNKWALIARLFPGRTDNAVKNHWHVI+ARK R+H KI
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

SwissProt top hitse value%identityAlignment
Q5NBM8 Transcription factor CSA2.1e-3288.41Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQ
        GKSCRLRWFNQLDPRINRR F+EEEEERLMAAHR +GNKWALIARLFPGRTDNAVKNHWHV++AR+HR+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQ

Q6R0C4 Transcription factor MYB522.3e-3179.45Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINR PF+EEEEERL+A+HRIHGN+W++IAR FPGRTDNAVKNHWHVI+AR+ R+  K+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

Q9FX36 Transcription factor MYB543.5e-3284.72Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFK
        GKSCRLRWFNQLDPRINR PF+EEEEERL+AAHRIHGN+W++IARLFPGRTDNAVKNHWHVI+AR+ RQ  K
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFK

Q9LQX5 Transcription factor MYB1173.5e-3284.29Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQH
        GKSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARLFPGRTDN+VKNHWHV++ARK+R+H
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQH

Q9SEZ4 Transcription factor MYB1053.9e-3185.51Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQ
        GKSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARLFPGRTDN+VKNHWHVI+ARK R+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQ

Arabidopsis top hitse value%identityAlignment
AT1G17950.1 myb domain protein 521.6e-3279.45Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI
        GKSCRLRWFNQLDPRINR PF+EEEEERL+A+HRIHGN+W++IAR FPGRTDNAVKNHWHVI+AR+ R+  K+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI

AT1G26780.1 myb domain protein 1172.5e-3384.29Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQH
        GKSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARLFPGRTDN+VKNHWHV++ARK+R+H
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQH

AT1G26780.2 myb domain protein 1172.5e-3384.29Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQH
        GKSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARLFPGRTDN+VKNHWHV++ARK+R+H
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQH

AT1G69560.1 myb domain protein 1052.8e-3285.51Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQ
        GKSCRLRWFNQLDPRINRR F+EEEEERLM AHR++GNKWA+IARLFPGRTDN+VKNHWHVI+ARK R+
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQ

AT1G73410.1 myb domain protein 542.5e-3384.72Show/hide
Query:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFK
        GKSCRLRWFNQLDPRINR PF+EEEEERL+AAHRIHGN+W++IARLFPGRTDNAVKNHWHVI+AR+ RQ  K
Subjt:  GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGAAGAGTTGCAGATTGAGATGGTTCAATCAACTAGATCCAAGAATAAACCGAAGGCCATTCAGTGAAGAAGAAGAAGAGAGATTAATGGCGGCGCATCGGATCCACGG
CAACAAATGGGCCTTAATCGCCAGGCTTTTCCCCGGAAGAACCGATAACGCCGTCAAAAATCACTGGCACGTAATAATCGCCAGAAAGCACAGGCAACACTTCAAAATA
mRNA sequenceShow/hide mRNA sequence
GGGAAGAGTTGCAGATTGAGATGGTTCAATCAACTAGATCCAAGAATAAACCGAAGGCCATTCAGTGAAGAAGAAGAAGAGAGATTAATGGCGGCGCATCGGATCCACGG
CAACAAATGGGCCTTAATCGCCAGGCTTTTCCCCGGAAGAACCGATAACGCCGTCAAAAATCACTGGCACGTAATAATCGCCAGAAAGCACAGGCAACACTTCAAAATA
Protein sequenceShow/hide protein sequence
GKSCRLRWFNQLDPRINRRPFSEEEEERLMAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIIARKHRQHFKI