; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020875 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020875
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionribosome maturation protein SBDS
Genome locationscaffold382:248963..251810
RNA-Seq ExpressionMS020875
SyntenyMS020875
Gene Ontology termsGO:0042256 - mature ribosome assembly (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002140 - Ribosome maturation protein Sdo1/SBDS
IPR013087 - Zinc finger C2H2-type
IPR018023 - Ribosome maturation protein SBDS, conserved site
IPR018978 - Ribosome maturation protein Sdo1/SBDS, C-terminal
IPR019783 - Ribosome maturation protein Sdo1/SBDS, N-terminal
IPR036236 - Zinc finger C2H2 superfamily
IPR036786 - Ribosome maturation protein SBDS, N-terminal domain superfamily
IPR037188 - Ribosome maturation protein Sdo1/SBDS, central domain superfamily
IPR039100 - Ribosome maturation protein Sdo1/SBDS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592159.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. sororia]3.8e-18591.94Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLL+KLN+W+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR
        SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDDF+NVELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR

Query:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CSTCNV VGDA QFREHHK EWHKHNVKRKTKNLPPLTEEECMVE+AMG+SESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

XP_022153710.1 ribosome maturation protein SBDS [Momordica charantia]6.4e-20199.72Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCST
        SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDN ELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCST
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCST

Query:  CNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
Subjt:  CNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

XP_022936066.1 ribosome maturation protein SBDS [Cucurbita moschata]3.8e-18591.94Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLL+KLN+W+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR
        SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDDF+NVELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR

Query:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CSTCNV VGDA QFREHHK EWHKHNVKRKTKNLPPLTEEECMVE+AMG+SESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

XP_022975304.1 ribosome maturation protein SBDS [Cucurbita maxima]1.1e-18491.39Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLL+KLN+W+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR
        SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDDF+NVELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR

Query:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CSTCNV VGDA QFREHHK EWHKHN+KRKTKNLPPLTEEECMVE+A+G+SESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

XP_038886377.1 ribosome maturation protein SBDS [Benincasa hispida]2.4e-18792.48Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQT ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRY VPEQNFPSLL+KLNAW+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKRC
        SNDQSG+QQRS+ICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDD++NVELPPRQVK  ES IPQL+EALQ+QTISV  ENA KEGKRC
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKRC

Query:  STCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        STCNV VGDATQFREHHK EWHKHNVKRKTKNLPPLTEEEC VELAMG++ESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

TrEMBL top hitse value%identityAlignment
A0A1S3CRW0 ribosome maturation protein SBDS5.9e-18490.53Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF TDDQT ICLKILKEGELQ+A K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLL+KLNAW+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKRC
        SNDQSG+QQRS+ICELDPSFYRDCNPLMSEL GRFEVLSFCLHEEGDTNVDQY+DD++NVEL PRQ+K  ES IPQLSEALQ+QTISV  +NAPKEGKRC
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKRC

Query:  STCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        STCNVAVGDAT+FREHHK +WHKHNVKRKTKNLPPLTEEEC VELAMG+SESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

A0A5A7UXA4 Ribosome maturation protein SBDS5.9e-18490.53Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF TDDQT ICLKILKEGELQ+A K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMR+RY VPEQN PSLL+KLNAW+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKRC
        SNDQSG+QQRS+ICELDPSFYRDCNPLMSEL GRFEVLSFCLHEEGDTNVDQY+DD++NVEL PRQ+K  ES IPQLSEALQ+QTISV  +NAPKEGKRC
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKRC

Query:  STCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        STCNVAVGDAT+FREHHK +WHKHNVKRKTKNLPPLTEEEC VELAMG+SESDLK+YSF
Subjt:  STCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

A0A6J1DHK8 ribosome maturation protein SBDS3.1e-20199.72Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCST
        SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDN ELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCST
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCST

Query:  CNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
Subjt:  CNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

A0A6J1F6G6 ribosome maturation protein SBDS1.8e-18591.94Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLL+KLN+W+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR
        SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDDF+NVELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR

Query:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CSTCNV VGDA QFREHHK EWHKHNVKRKTKNLPPLTEEECMVE+AMG+SESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

A0A6J1IK36 ribosome maturation protein SBDS5.3e-18591.39Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ  ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLL+KLN+W+AS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR
        SNDQSG+QQRSVICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDDF+NVELPPR VK  ES IPQLSEALQ+Q ISV+G N  KEGKR
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDFDNVELPPRQVK--ESLIPQLSEALQRQTISVEGENAPKEGKR

Query:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        CSTCNV VGDA QFREHHK EWHKHN+KRKTKNLPPLTEEECMVE+A+G+SESDLK+YSF
Subjt:  CSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

SwissProt top hitse value%identityAlignment
P70122 Ribosome maturation protein SBDS2.0e-6453.85Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQT IC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH+++ PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL       +   
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND

Query:  QSGSQQRSVICELDPSFYRDCNPLM-SELQGR--FEVLSFCLHEEGD
        +  SQQ  ++C +DP  +R+ + L+  E +GR   EVLS    EEGD
Subjt:  QSGSQQRSVICELDPSFYRDCNPLM-SELQGR--FEVLSFCLHEEGD

Q3SWZ6 Ribosome maturation protein SBDS1.0e-6352.63Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQT IC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH+++ PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL       +   
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND

Query:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
        +   QQ  ++C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Q5RAZ2 Ribosome maturation protein SBDS1.9e-6251.82Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQT IC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH+++  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL       +   
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND

Query:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
        +   QQ  ++C +DP  +R+ + L+   ++ +G  EVL+    EEGD
Subjt:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Q5RK30 Ribosome maturation protein SBDS2.6e-6453.04Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQT IC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH+++ PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL       +   
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND

Query:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
        +  SQQ  ++C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Q9Y3A5 Ribosome maturation protein SBDS1.9e-6251.82Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQT IC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH+++  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L EKL       +   
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSND

Query:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
        +   QQ  ++C +DP  +R+ + L+   ++ +G  EVL+    EEGD
Subjt:  QSGSQQRSVICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Arabidopsis top hitse value%identityAlignment
AT1G43860.1 sequence-specific DNA binding transcription factors1.3e-12761.73Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK
        MS++LVQP+GQKRLTNVAVVRLK+ G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYSNVSKGVLAK+KDL  +F +DD T IC+ IL++GELQ+A K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL
        ERE+Q S+QFRDIATIVMQKT NPET+RPYTISM+ERLM EIHFA+DP+ +SKKQAL+VI ELQK FPIKRSPMR+R TVP QNFPSLLEKL  W+ S +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNL

Query:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFD------NVELPPRQVKESL---IPQLSEALQRQTISV-----
        S D+SG+Q  S +CE++P  +R+C+  +  +QGR E+L+  +H EGDT++D YD+  D         LP     + L   + +LS+ LQ+Q IS      
Subjt:  SNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFD------NVELPPRQVKESL---IPQLSEALQRQTISV-----

Query:  EGENAPKEGKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF
        +     K+G +CSTCN  VG+A Q+REH K +WHKHN+KRKT+ LPP++ +ECM E+ M +S +DLKDYSF
Subjt:  EGENAPKEGKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF

AT2G24500.1 Zinc finger protein 6224.1e-0440.48Show/hide
Query:  GKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTE
        G  C++CN    D  + + H+K EWH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTE

AT4G31420.1 Zinc finger protein 6225.4e-0438.1Show/hide
Query:  GKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   H+K +WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTE

AT4G31420.2 Zinc finger protein 6225.4e-0438.1Show/hide
Query:  GKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   H+K +WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGATCGCTGGTGCAGCCGATCGGACAGAAGAGGCTCACCAACGTCGCGGTGGTTCGTTTGAAAAGGCACGGTCTCCGCTTCGAGATTGCTTGTTACAAGAACAA
GGTCCTTTCATGGCGCTCTGGCGTGGAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCGAAAACAAAAGATTTAA
AGGCAGCTTTCGACACAGATGATCAGACGGCCATTTGTTTGAAGATTCTAAAAGAAGGGGAACTTCAAATTGCAGTGAAGGAGAGGGAGGCTCAATTATCCAATCAATTT
CGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATCGAGCGGCTGATGCGTGAAATTCATTTTGCCATTGA
TCCAAATCACAGTTCAAAGAAACAGGCACTTGAGGTCATTCATGAGCTCCAAAAACAGTTTCCAATTAAACGTTCACCTATGAGAATACGCTATACCGTACCTGAACAGA
ATTTTCCATCTCTTCTTGAAAAGTTAAATGCATGGAATGCTAGTAACCTTTCCAATGATCAGTCTGGAAGTCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTT
TATCGAGACTGTAATCCCTTAATGAGTGAACTACAAGGAAGATTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATATGATGACGATTT
CGACAATGTGGAACTGCCACCTAGGCAAGTCAAGGAATCGTTGATTCCTCAGCTAAGTGAAGCTTTACAAAGACAGACAATCTCCGTCGAGGGTGAAAATGCACCAAAGG
AAGGAAAACGCTGCAGCACATGTAACGTTGCTGTGGGGGATGCTACTCAATTTAGAGAGCATCACAAGGGCGAATGGCATAAGCATAATGTGAAGCGCAAAACCAAGAAT
CTCCCTCCTCTGACCGAAGAAGAGTGCATGGTTGAATTGGCAATGGGCAATTCCGAGTCCGATTTGAAGGATTATTCATTT
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGATCGCTGGTGCAGCCGATCGGACAGAAGAGGCTCACCAACGTCGCGGTGGTTCGTTTGAAAAGGCACGGTCTCCGCTTCGAGATTGCTTGTTACAAGAACAA
GGTCCTTTCATGGCGCTCTGGCGTGGAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCGAAAACAAAAGATTTAA
AGGCAGCTTTCGACACAGATGATCAGACGGCCATTTGTTTGAAGATTCTAAAAGAAGGGGAACTTCAAATTGCAGTGAAGGAGAGGGAGGCTCAATTATCCAATCAATTT
CGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATCGAGCGGCTGATGCGTGAAATTCATTTTGCCATTGA
TCCAAATCACAGTTCAAAGAAACAGGCACTTGAGGTCATTCATGAGCTCCAAAAACAGTTTCCAATTAAACGTTCACCTATGAGAATACGCTATACCGTACCTGAACAGA
ATTTTCCATCTCTTCTTGAAAAGTTAAATGCATGGAATGCTAGTAACCTTTCCAATGATCAGTCTGGAAGTCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTT
TATCGAGACTGTAATCCCTTAATGAGTGAACTACAAGGAAGATTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATATGATGACGATTT
CGACAATGTGGAACTGCCACCTAGGCAAGTCAAGGAATCGTTGATTCCTCAGCTAAGTGAAGCTTTACAAAGACAGACAATCTCCGTCGAGGGTGAAAATGCACCAAAGG
AAGGAAAACGCTGCAGCACATGTAACGTTGCTGTGGGGGATGCTACTCAATTTAGAGAGCATCACAAGGGCGAATGGCATAAGCATAATGTGAAGCGCAAAACCAAGAAT
CTCCCTCCTCTGACCGAAGAAGAGTGCATGGTTGAATTGGCAATGGGCAATTCCGAGTCCGATTTGAAGGATTATTCATTT
Protein sequenceShow/hide protein sequence
MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKEREAQLSNQF
RDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSNDQSGSQQRSVICELDPSF
YRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNVELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKN
LPPLTEEECMVELAMGNSESDLKDYSF