CuGenDBv2

Gene ID	MS020905
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein Sm D2
Genome location	scaffold382:503463..503966
RNA-Seq Expression	MS020905
Synteny	MS020905
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027248 - Small nuclear ribonucleoprotein Sm D2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044802.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa]

1.5e-46

95.96

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Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

KAB1205886.1 putative small nuclear ribonucleoprotein Sm D2 [Morella rubra]

1.9e-46

96.94

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Query:  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

KAG6577216.1 U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-46

95.96

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Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

XP_004146504.1 small nuclear ribonucleoprotein Sm D2 [Cucumis sativus]

1.5e-46

95.96

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Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

XP_010269566.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucifera]

1.9e-46

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Query:  QSSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        Q  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  QSSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUK4 Small nuclear ribonucleoprotein Sm D2

7.2e-47

95.96

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Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

A0A1S3BTT5 Small nuclear ribonucleoprotein Sm D2

7.2e-47

95.96

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Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

A0A2N9FEF8 Small nuclear ribonucleoprotein Sm D2

7.2e-47

95.96

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Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

A0A5A7TNA0 Small nuclear ribonucleoprotein Sm D2

7.2e-47

95.96

Show/hide

Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

A0A6J1J3W3 Small nuclear ribonucleoprotein Sm D2

7.2e-47

95.96

Show/hide

Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

SwissProt top hits

e value

%identity

Alignment

P62316 Small nuclear ribonucleoprotein Sm D2

1.1e-44

88.54

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Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKSGKGK K++P+NKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D2

1.1e-44

88.54

Show/hide

Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKSGKGK K++P+NKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP

Q18786 Probable small nuclear ribonucleoprotein Sm D2

6.3e-40

81.91

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Query:  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP
        E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGK KA+ + KDRFISKMFLRGDSVI+V++NP
Subjt:  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D2

1.1e-44

88.54

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Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKSGKGK K++P+NKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D2

1.6e-43

84.54

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Query:  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP
        ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGK K +P+NKDRFISKMFLRGDSVI+VLRNP
Subjt:  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hits

e value

%identity

Alignment

AT2G47640.1 Small nuclear ribonucleoprotein family protein

6.5e-48

92.78

Show/hide

Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein

6.5e-48

90.91

Show/hide

Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein

6.5e-48

90.91

Show/hide

Query:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Subjt:  SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein

6.5e-48

92.78

Show/hide

Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

AT3G62840.1 Small nuclear ribonucleoprotein family protein

6.5e-48

92.78

Show/hide

Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

Sequences

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CDS sequence

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CAGTCTAGCAAGAACGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTAAAAAACAACACTCAGGTTCTTATCAACTGTCGAAACAATAAAAA
GCTTTTGGGACGAGTGAGAGCCTTCGACCGCCACTGTAACATGGTTTTGGAAAATGTCAGAGAAATGTGGACTGAGGTCCCTAAAAGTGGAAAAGGGAAGAATAAAGCAC
AGCCTATAAACAAAGACAGATTCATCAGCAAGATGTTCTTGAGAGGAGACTCTGTTATTATAGTTCTCAGGAATCCCAAA

mRNA sequence

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Protein sequence

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QSSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

MS020905 (gene) of Bitter gourd (TR) v1 genome