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MS020924 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020924
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold382:662358..662572
RNA-Seq ExpressionMS020924
SyntenyMS020924
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0744.44Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV
        W PI  S+   L   F+E EI  AL     NK PGPDG+  EFL  FW +LK D+I +F++FH+   +N +V
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV

PON85139.1 hypothetical protein TorRG33x02_191130, partial [Trema orientale]4.4e-0847.14Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNA
        W PIS  +  WL + FEE E+ SA+     +K PGPDGF        W  +K DL+ +FQEFHQNG +NA
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNA

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0744.44Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV
        W PI  S+   L   F+E EI  AL     NK PGPDG+  EFL  FW +LK D+I +F++FH+   +N +V
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]4.8e-0740Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGL-RKNKPGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNA
        W  IS S  +W+ER FEE E+  A+    R   PGPDG++ +    FW++LK D++ + +EF + G +NA
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGL-RKNKPGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNA

XP_026378371.1 uncharacterized protein LOC113272788 [Papaver somniferum]3.7e-0738.03Show/hide
Query:  RPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV
        + I  + R WLER+F E ++  A++ L  ++ PGPDGF  +F I  W+++K DL+ +F++FH N  L+  +
Subjt:  RPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV

TrEMBL top hitse value%identityAlignment
A0A2P5EHY7 Uncharacterized protein (Fragment)2.1e-0847.14Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNA
        W PIS  +  WL + FEE E+ SA+     +K PGPDGF        W  +K DL+ +FQEFHQNG +NA
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNA

A0A4Y1RS61 TatD related DNase4.0e-0743.48Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLN
        W PIS +   WLER FE  E+  A+    K+K PGPDGF+  F  + W+ +K DL+ + Q+F Q+G +N
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLN

A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein6.1e-0844.44Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV
        W PI  S+   L   F+E EI  AL     NK PGPDG+  EFL  FW +LK D+I +F++FH+   +N +V
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein6.1e-0844.44Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV
        W PI  S+   L   F+E EI  AL     NK PGPDG+  EFL  FW +LK D+I +F++FH+   +N +V
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV

A5BQI4 Reverse transcriptase domain-containing protein3.0e-0744.93Show/hide
Query:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLN
        W PIS     WL+R F E E+  A+  L K K PGPDGF        W  +K DL+ +F EFH NG +N
Subjt:  WRPISYSVRSWLERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLN

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog4.7e-0543.86Show/hide
Query:  LERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHL
        L R     EI S +  L K K PGPDGF +EF  TF + L P L+++FQ   + G L
Subjt:  LERSFEEVEIGSALNGLRKNK-PGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAGACCTATTTCCTATTCTGTCAGATCATGGCTGGAGAGAAGCTTCGAGGAAGTAGAAATCGGGTCTGCATTAAATGGCCTAAGGAAGAATAAACCCGGACCCGACGG
TTTCGCAACAGAATTTCTAATCACTTTTTGGAAGTACTTAAAGCCGGATTTAATTCATATGTTTCAAGAGTTTCACCAAAATGGGCACCTCAATGCTGATGTT
mRNA sequenceShow/hide mRNA sequence
TGGAGACCTATTTCCTATTCTGTCAGATCATGGCTGGAGAGAAGCTTCGAGGAAGTAGAAATCGGGTCTGCATTAAATGGCCTAAGGAAGAATAAACCCGGACCCGACGG
TTTCGCAACAGAATTTCTAATCACTTTTTGGAAGTACTTAAAGCCGGATTTAATTCATATGTTTCAAGAGTTTCACCAAAATGGGCACCTCAATGCTGATGTT
Protein sequenceShow/hide protein sequence
WRPISYSVRSWLERSFEEVEIGSALNGLRKNKPGPDGFATEFLITFWKYLKPDLIHMFQEFHQNGHLNADV