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MS020955 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020955
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold290:133880..134050
RNA-Seq ExpressionMS020955
SyntenyMS020955
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.0e-0749.12Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +WK   P+   FF+W+L+   +NT DRLQKR PN AL+ N C MC +S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.0e-0742.11Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +W+ + P+   FF+W++V + LNTMD++QKRNP+++L  + C+ C+ S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-0743.86Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +W+ + P+   FF+W++V + LNTMD +QKRNP++ L  N C+ C+ S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
TYK10888.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-0845.61Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +W+ + P+   FF+W++V + LNTMD +QKRNPN+ L  N C+ C+ S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.0e-0749.12Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +WK   P+   FF+W+L+   +NT DRLQKR PN AL+ N C MC +S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
TrEMBL top hitse value%identityAlignment
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein2.4e-0749.12Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +WK   P+   FF+W+L+   +NT DRLQKR PN AL+ N C MC +S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein2.4e-0742.11Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +W+ + P+   FF+W++V + LNTMD++QKRNP+++L  + C+ C+ S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein1.4e-0743.86Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +W+ + P+   FF+W++V + LNTMD +QKRNP++ L  N C+ C+ S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
A0A5D3CI43 LINE-1 retrotransposable element ORF2 protein3.8e-0845.61Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +W+ + P+   FF+W++V + LNTMD +QKRNPN+ L  N C+ C+ S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein2.4e-0749.12Show/hide
Query:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
        +WK   P+   FF+W+L+   +NT DRLQKR PN AL+ N C MC +S E  +HL I
Subjt:  IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTGGAAAGGAAATAGCCCAAGAAACAATTCTTTTTTTGTTTGGTCTCTTGTTCGTAGGAGCTTGAATACTATGGATAGACTGCAAAAAAGGAACCCAAACATAGCCTT
AACCGCAAATATGTGTCTGATGTGCAAACGTAGTGCAGAAACTTGCGACCATTTGTGCATA
mRNA sequenceShow/hide mRNA sequence
ATTTGGAAAGGAAATAGCCCAAGAAACAATTCTTTTTTTGTTTGGTCTCTTGTTCGTAGGAGCTTGAATACTATGGATAGACTGCAAAAAAGGAACCCAAACATAGCCTT
AACCGCAAATATGTGTCTGATGTGCAAACGTAGTGCAGAAACTTGCGACCATTTGTGCATA
Protein sequenceShow/hide protein sequence
IWKGNSPRNNSFFVWSLVRRSLNTMDRLQKRNPNIALTANMCLMCKRSAETCDHLCI