; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021008 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021008
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase SDIR1-like
Genome locationscaffold290:506473..506892
RNA-Seq ExpressionMS021008
SyntenyMS021008
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052944.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]4.8e-4368.63Show/hide
Query:  MVFNRVFFFFY-NFIGFRGRP-KLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEE---------GIETSVLPCLHEFHK
        MVFN+VFFFFY NFIGFR RP + KQ T LPHGG+S+LR M   +  I   + LSS  KALEGE  CCVCLSSM           G  TSVLPCLHEFHK
Subjt:  MVFNRVFFFFY-NFIGFRGRP-KLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEE---------GIETSVLPCLHEFHK

Query:  VCVDRWFEERRRTCPICRYSME-GAGQSNENGT-QILTDEMVIWFSSFHTSGF
        VCV+RWFEE RRTCPICRYSME G G S+E+ T QILTDEMVIWFSSFHTSGF
Subjt:  VCVDRWFEERRRTCPICRYSME-GAGQSNENGT-QILTDEMVIWFSSFHTSGF

KAG6577791.1 Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]3.7e-4366.89Show/hide
Query:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCV-TLSSSGKALEGEMCCCVCLSSM-----EEGIETSVLPCLHEFHKVCVD
        MVFN++FFFFY N IGFR  P LKQ T LP   DS+LR M        DCV  LSS  KALEGE  CCVCLS M     +EGI TSVLPC HEFHK+C+D
Subjt:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCV-TLSSSGKALEGEMCCCVCLSSM-----EEGIETSVLPCLHEFHKVCVD

Query:  RWFEERRRTCPICRYSMEGAGQSNENGT-QILTDEMVIWFSSFHTSGF
        RWFEE RRTCPICRYSMEG G ++E+G+ ++LTDEMVIWFSSFHTSGF
Subjt:  RWFEERRRTCPICRYSMEGAGQSNENGT-QILTDEMVIWFSSFHTSGF

KAG7015830.1 Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-4266.22Show/hide
Query:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCV-TLSSSGKALEGEMCCCVCLSSM-----EEGIETSVLPCLHEFHKVCVD
        MVFN++FFFFY N IGFR  P LKQ T LP   DS+LR          DCV  LSS  KALEGE  CCVCLS M     +EGI TSVLPC HEFHK+C+D
Subjt:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCV-TLSSSGKALEGEMCCCVCLSSM-----EEGIETSVLPCLHEFHKVCVD

Query:  RWFEERRRTCPICRYSMEGAGQSNENGT-QILTDEMVIWFSSFHTSGF
        RWFEE RRTCPICRYSMEG G ++E+G+ ++LTDEMVIWFSSFHTSGF
Subjt:  RWFEERRRTCPICRYSMEGAGQSNENGT-QILTDEMVIWFSSFHTSGF

XP_022145297.1 E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia]1.1e-7497.14Show/hide
Query:  MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERR
        MVFNRVFFFFYNFIGFRGRPKLKQ TLLPHGGDSTLRQMVE ESRIPDCVTLSSSGKALEGEMCCCVCLSS+EEGIETSVLPCLHEFHKVCVDRWFEERR
Subjt:  MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERR

Query:  RTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF
        RTCPICRYSMEGAGQ NENGTQILTDEMVIWFSSFHTSGF
Subjt:  RTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF

XP_038906276.1 E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]6.7e-4567.33Show/hide
Query:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEE---------GIETSVLPCLHEFHKV
        MVFN+VFFFFY NF+GFR R + KQ T LPHGG+ +LR +   +  I   VTLSS  KALEGE  CCVCLSSM           G  TSVLPCLHEFHKV
Subjt:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEE---------GIETSVLPCLHEFHKV

Query:  CVDRWFEERRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF
        CVDRWFEE RRTCPICRYSMEG G   +   QILTDEMVIWFSSFHTSGF
Subjt:  CVDRWFEERRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF

TrEMBL top hitse value%identityAlignment
A0A0A0L4W7 RING-type domain-containing protein1.6e-4465.54Show/hide
Query:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSM-------EEGIETSVLPCLHEFHKVCV
        M+FN+VFFFFY N IGFR RP+ KQ T LP  G+S+LR +   +  I   + LSS  KALEGE  CCVCLSSM       ++G+ TSVLPCLHEFHKVCV
Subjt:  MVFNRVFFFFY-NFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSM-------EEGIETSVLPCLHEFHKVCV

Query:  DRWFEERRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF
        +RWFEE RRTCPICRYSMEG G   +   QILTDEMVIWFSSFHTSGF
Subjt:  DRWFEERRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF

A0A2P5BXH0 43kDa postsynaptic protein2.2e-2547.89Show/hide
Query:  MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVE--YESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEE
        MV N++F      I  +G+P++K+T       +   +Q VE        DC+       A EGE  CCVCLS +EEG ETSVLPCLHEFHK CV+RWF  
Subjt:  MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVE--YESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEE

Query:  RRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF
        R +TCPICR+SME  G+  + G +  T+EM+I+FSSFH +GF
Subjt:  RRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF

A0A5D3CJ45 E3 ubiquitin-protein ligase RNF132.3e-4368.63Show/hide
Query:  MVFNRVFFFFY-NFIGFRGRP-KLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEE---------GIETSVLPCLHEFHK
        MVFN+VFFFFY NFIGFR RP + KQ T LPHGG+S+LR M   +  I   + LSS  KALEGE  CCVCLSSM           G  TSVLPCLHEFHK
Subjt:  MVFNRVFFFFY-NFIGFRGRP-KLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEE---------GIETSVLPCLHEFHK

Query:  VCVDRWFEERRRTCPICRYSME-GAGQSNENGT-QILTDEMVIWFSSFHTSGF
        VCV+RWFEE RRTCPICRYSME G G S+E+ T QILTDEMVIWFSSFHTSGF
Subjt:  VCVDRWFEERRRTCPICRYSME-GAGQSNENGT-QILTDEMVIWFSSFHTSGF

A0A6A1UIA7 Protein preY, mitochondrial5.2e-2748.51Show/hide
Query:  YNFIGFRGRPKLKQTTLLPHGGDSTLR----QMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPIC
        +  IG R +P LK+    P    S +       V+ +  +    + SSSG+  EGE  CCVCLS +++G +T +LPCLHEFHKVCVDRWF   R+TCP+C
Subjt:  YNFIGFRGRPKLKQTTLLPHGGDSTLR----QMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPIC

Query:  RYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF
        R+SM   G+ N    + LTDEMVIWFSSFH +GF
Subjt:  RYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF

A0A6J1CW69 E3 ubiquitin-protein ligase SDIR1-like5.1e-7597.14Show/hide
Query:  MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERR
        MVFNRVFFFFYNFIGFRGRPKLKQ TLLPHGGDSTLRQMVE ESRIPDCVTLSSSGKALEGEMCCCVCLSS+EEGIETSVLPCLHEFHKVCVDRWFEERR
Subjt:  MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERR

Query:  RTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF
        RTCPICRYSMEGAGQ NENGTQILTDEMVIWFSSFHTSGF
Subjt:  RTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFHTSGF

SwissProt top hitse value%identityAlignment
E9QAU8 E3 ubiquitin-protein ligase RNF1658.1e-0940.79Show/hide
Query:  EYESRIPDCVTLSSSGKALEGEMC-----CCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSME
        +Y+ R P      S GK  EGE       C +CLS +E+G +   LPC+H FH++CVD+W    ++ CPICR  +E
Subjt:  EYESRIPDCVTLSSSGKALEGEMC-----CCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSME

Q0WPW5 Receptor homology region, transmembrane domain- and RING domain-containing protein 44.7e-0930.43Show/hide
Query:  FRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR
        F  R ++++  +L   G+   R       R+P  +      +A    + CC+CL + E+G +  +LPC H+FH  CVD W  +R+  CP+C+
Subjt:  FRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR

Q5R476 E3 ubiquitin-protein ligase Arkadia2.1e-0940.85Show/hide
Query:  EYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSME
        +Y+ R   C      G   + E  C +CLS +EEG +   LPC+H FH+VCVD+W    ++ CPICR  +E
Subjt:  EYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSME

Q8GUU2 E3 ubiquitin protein ligase RIE12.1e-0942.37Show/hide
Query:  LSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM
        L++    L  +  CC+CLSS E+G E   LPC H FH  C+ +W  + R TCP+C+Y++
Subjt:  LSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM

Q9M2S6 E3 ubiquitin-protein ligase SDIR11.6e-0932.32Show/hide
Query:  PKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQSNE
        P  K   L P  G S  +Q     S      + + S K  E E+ C VCL  +  G     LPCLH+FH  C+D W  + + TCP+C++      Q  +
Subjt:  PKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQSNE

Arabidopsis top hitse value%identityAlignment
AT2G01735.1 RING-finger protein for embryogenesis1.5e-1042.37Show/hide
Query:  LSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM
        L++    L  +  CC+CLSS E+G E   LPC H FH  C+ +W  + R TCP+C+Y++
Subjt:  LSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM

AT3G51325.1 RING/U-box superfamily protein7.7e-1548.68Show/hide
Query:  EMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFE-ERRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFH
        E CC VCL  ME       LPC HEFH +CVD WF   R+  CP+CR+S           T +LTDE+++WFSSFH
Subjt:  EMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFE-ERRRTCPICRYSMEGAGQSNENGTQILTDEMVIWFSSFH

AT3G55530.1 RING/U-box superfamily protein1.2e-1032.32Show/hide
Query:  PKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQSNE
        P  K   L P  G S  +Q     S      + + S K  E E+ C VCL  +  G     LPCLH+FH  C+D W  + + TCP+C++      Q  +
Subjt:  PKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQSNE

AT4G09560.1 Protease-associated (PA) RING/U-box zinc finger family protein3.4e-1030.43Show/hide
Query:  FRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR
        F  R ++++  +L   G+   R       R+P  +      +A    + CC+CL + E+G +  +LPC H+FH  CVD W  +R+  CP+C+
Subjt:  FRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR

AT5G45290.1 RING/U-box superfamily protein9.8e-1053.49Show/hide
Query:  CCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR
        C +CL   EE      LPC HEFHK CVD+W +E  R CP+CR
Subjt:  CCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCAACAGGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAACAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCG
GCAGATGGTGGAGTATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATGGAAG
AAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGCGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATG
GAAGGAGCAGGGCAGAGTAATGAAAATGGGACTCAGATACTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTC
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCAACAGGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAACAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCG
GCAGATGGTGGAGTATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATGGAAG
AAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGCGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATG
GAAGGAGCAGGGCAGAGTAATGAAAATGGGACTCAGATACTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTC
Protein sequenceShow/hide protein sequence
MVFNRVFFFFYNFIGFRGRPKLKQTTLLPHGGDSTLRQMVEYESRIPDCVTLSSSGKALEGEMCCCVCLSSMEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSM
EGAGQSNENGTQILTDEMVIWFSSFHTSGF