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MS021019 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021019
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionbeta-carotene isomerase D27, chloroplastic
Genome locationscaffold290:585290..585483
RNA-Seq ExpressionMS021019
SyntenyMS021019
Gene Ontology termsGO:0005506 - iron ion binding (molecular function)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR025114 - Beta-carotene isomerase D27-like, C-terminal
IPR038938 - Beta-carotene isomerase D27-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448557.1 PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]5.5e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
XP_011650294.1 beta-carotene isomerase D27, chloroplastic [Cucumis sativus]5.5e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
XP_023540699.1 beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]5.5e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
XP_039015874.1 beta-carotene isomerase D27, chloroplastic isoform X1 [Hibiscus syriacus]5.5e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
XP_039015875.1 beta-carotene isomerase D27, chloroplastic isoform X2 [Hibiscus syriacus]5.5e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
TrEMBL top hitse value%identityAlignment
A0A0A0L682 DUF4033 domain-containing protein2.7e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
A0A1S3BKU4 beta-carotene isomerase D27, chloroplastic2.7e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
A0A5A7UFH7 Beta-carotene isomerase D272.7e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
A0A6A2ZDS3 Methionine gamma-lyase-like2.7e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
A0A6J1L2P3 beta-carotene isomerase D27, chloroplastic2.7e-1089.47Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        VVEVEVN IKQ SGVHIKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
SwissProt top hitse value%identityAlignment
C7AU21 Beta-carotene isomerase D27, chloroplastic3.3e-0552.63Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        V+E EV   K+ + V+I KC++LE++ CVGMC N+CKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
Q7XA78 Beta-carotene isomerase D27, chloroplastic8.6e-0657.89Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        V E EVN  K+ S V+I+KC++LE S CVGMC ++CKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
R4HZ96 Beta-carotene isomerase D27, chloroplastic3.9e-0652.63Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        V E E+N  ++ + VHIKKC++LE + CVGMC+N+CK+
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
Arabidopsis top hitse value%identityAlignment
AT1G03055.1 unknown protein6.1e-0757.89Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        V E EVN  K+ S V+I+KC++LE S CVGMC ++CKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
AT1G64680.1 unknown protein7.5e-1381.58Show/hide
Query:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
        V+EVEVN +KQ SGV IKKC+YLENS CVGMCVNMCKI
Subjt:  VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI
AT4G01995.1 unknown protein1.5e-0561.54Show/hide
Query:  SGVHIKKCKYLENSRCVGMCVNMCKI
        SGV ++KC+YLE S+CVG+C+N CK+
Subjt:  SGVHIKKCKYLENSRCVGMCVNMCKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGGTGGAAGTAGAGGTAAATAGTATAAAACAAACAAGTGGAGTTCATATAAAAAAGTGCAAGTACCTAGAGAACAGTAGGTGTGTTGGTATGTGTGTGAATATGTGCAA
GATA
mRNA sequenceShow/hide mRNA sequence
GTGGTGGAAGTAGAGGTAAATAGTATAAAACAAACAAGTGGAGTTCATATAAAAAAGTGCAAGTACCTAGAGAACAGTAGGTGTGTTGGTATGTGTGTGAATATGTGCAA
GATA
Protein sequenceShow/hide protein sequence
VVEVEVNSIKQTSGVHIKKCKYLENSRCVGMCVNMCKI