; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021033 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021033
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncold shock domain-containing protein 3
Genome locationscaffold290:679016..679801
RNA-Seq ExpressionMS021033
SyntenyMS021033
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596667.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-12692.48Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG

Query:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA
        FG  GWRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G CYNCGGFGHLARDCNRGGA
Subjt:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

KAG7028203.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-12592.48Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG

Query:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA
        FG  GWRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G CYNCGGFGHLARDCNRGGA
Subjt:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_022145255.1 cold shock domain-containing protein 3 [Momordica charantia]1.2e-14099.24Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGF
        MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF GGGGGGRGGRGGGYGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGS
        GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGS
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_022948847.1 cold shock protein 1-like [Cucurbita moschata]1.6e-12491.73Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG
        M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG

Query:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA
        FG  GWRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G CYNCGGFGHLARDCNRGGA
Subjt:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGS GGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_023540854.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]1.2e-12491.42Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG

Query:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA
        FG  GWRGGDRRNGSSGAGG GCY CGEQGHLARDC R SNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G CYNCGGFGHLARDCNRGGA
Subjt:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA

Query:  GGGS--GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGS  GGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGS--GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

TrEMBL top hitse value%identityAlignment
A0A1S3BKK1 cold shock domain-containing protein 31.0e-12489.74Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVV+LDGSSGNRRDNF  GGGGGGGRGGR    
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----

Query:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGAGAGACYNCGGFGHLAR
        GGGYGFG  GWRGGDRRNG+SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGEVGHLARDCPRGNS  GGGGG+G GACYNCGGFGHLAR
Subjt:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGAGAGACYNCGGFGHLAR

Query:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS-GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        DCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR S GG GRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS-GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA

A0A5D3CJR2 Cold shock domain-containing protein 31.0e-12489.74Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVV+LDGSSGNRRDNF  GGGGGGGRGGR    
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----

Query:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGAGAGACYNCGGFGHLAR
        GGGYGFG  GWRGGDRRNG+SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGEVGHLARDCPRGNS  GGGGG+G GACYNCGGFGHLAR
Subjt:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGAGAGACYNCGGFGHLAR

Query:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS-GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        DCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR S GG GRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS-GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA

A0A6J1CTY3 cold shock domain-containing protein 35.9e-14199.24Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGF
        MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF GGGGGGRGGRGGGYGF
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGF

Query:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGS
        GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGS
Subjt:  GGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

A0A6J1GAE9 cold shock protein 1-like7.8e-12591.73Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG
        M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYG
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYG

Query:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA
        FG  GWRGGDRRNGSSGAGG GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G CYNCGGFGHLARDCNRGGA
Subjt:  FGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGS GGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

E5RDD6 Cold-shock DNA-binding family protein1.0e-12489.74Show/hide
Query:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----
        MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVV+LDGSSGNRRDNF  GGGGGGGRGGR    
Subjt:  MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----

Query:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGAGAGACYNCGGFGHLAR
        GGGYGFG  GWRGGDRRNG+SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGEVGHLARDCPRGNS  GGGGG+G GACYNCGGFGHLAR
Subjt:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGAGAGACYNCGGFGHLAR

Query:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS-GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        DCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR S GG GRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  DCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS-GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 15.5e-5148.62Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFG---
        R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V +  G S  + +N  G G    GG  G Y  G   
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFG---

Query:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGAGA-----GACYNCGG
                G G  GG+RR+     GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G   GA       CY CG 
Subjt:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGAGA-----GACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC
         GH ARDC +  A G   SGGGG G C++CG  GH+AR+C  + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC

P27484 Glycine-rich protein 28.2e-3948.09Show/hide
Query:  MAEE---RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGG
        MAEE   R  G V+WFSD KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++       G GGGGG GGRGGG
Subjt:  MAEE---RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGG

Query:  YGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAG
         G+GG          GS G GG G               R  +RG GGG G +                 GGGGG G G+ Y  GG G+       GG  
Subjt:  YGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF-GGGGGGGSNTCFNCGKSGHFAREC
        GG G GGG GCF CGE GH AR+C ++S   GG GRF GGGGGGG   C+ CG+ GHFAREC
Subjt:  GGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF-GGGGGGGSNTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 46.3e-3147.51Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGGRGGRGGGYGFG
        +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN       GGGG  GGRG   GFG
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGGRGGRGGGYGFG

Query:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG
        G G RGG R  GS G GG G    G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G                R G+GGG G
Subjt:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGG-GCFNCGEYGHLAREC
        GGGGG  C++CGE GH AR+C
Subjt:  GGGGG-GCFNCGEYGHLAREC

Q41188 Cold shock protein 23.0e-3346.55Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGGRGGR
        ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+         S   R  FGGG GGGRG  
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGGRGGR

Query:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRG
        GGGYG GG G+ G     G  G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G G  Y  GG G+        
Subjt:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGCFNCGEYGHLARECPNESR
        G GG  GGGGGG C++CGE GH AR+C +  R
Subjt:  GAGGGSGGGGGGGCFNCGEYGHLARECPNESR

Q94C69 Cold shock domain-containing protein 34.1e-5449.66Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGG-------------R
        R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV +  G S N+++N   G GG               
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGG-------------R

Query:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEVGHLARDCPRGNS----GGGGGAGAG--ACYNC
         G  GG  FGG    GG RR+G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+     GGGGG G+G   CY C
Subjt:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEVGHLARDCPRGNS----GGGGGAGAG--ACYNC

Query:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC
        GG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Subjt:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 32.9e-5549.66Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGG-------------R
        R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV +  G S N+++N   G GG               
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGG-------------R

Query:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEVGHLARDCPRGNS----GGGGGAGAG--ACYNC
         G  GG  FGG    GG RR+G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+     GGGGG G+G   CY C
Subjt:  GGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEVGHLARDCPRGNS----GGGGGAGAG--ACYNC

Query:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC
        GG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Subjt:  GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC

AT2G21060.1 glycine-rich protein 2B4.5e-3247.51Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGGRGGRGGGYGFG
        +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+   GN       GGGG  GGRG   GFG
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS--SGNRRDNFGGGGGGGRGGRGGGYGFG

Query:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG
        G G RGG R  GS G GG G    G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G                R G+GGG G
Subjt:  GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGG-GCFNCGEYGHLAREC
        GGGGG  C++CGE GH AR+C
Subjt:  GGGGG-GCFNCGEYGHLAREC

AT2G36120.1 Glycine-rich protein family3.0e-0443.24Show/hide
Query:  GSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGA
        G+ G+   + GGGGGGG GG  GG G GG G  GG    G SG GG   Y  GE G            GGGGGGG    G  G  A     G  GGG GA
Subjt:  GSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGA

Query:  GAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEY--GHLARECPNESRNSG-GTGRFGGGGGGGSNTCFNCGKSGHFA
        GAG  Y  GG G      + GG GGG+GGGGGGG    G +  G+ A     E    G G G  GGGGGGG  +    G  G +A
Subjt:  GAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEY--GHLARECPNESRNSG-GTGRFGGGGGGGSNTCFNCGKSGHFA

AT4G36020.1 cold shock domain protein 13.9e-5248.62Show/hide
Query:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFG---
        R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V +  G S  + +N  G G    GG  G Y  G   
Subjt:  RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFG---

Query:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGAGA-----GACYNCGG
                G G  GG+RR+     GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G   GA       CY CG 
Subjt:  --------GSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGAGA-----GACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC
         GH ARDC +  A G   SGGGG G C++CG  GH+AR+C  + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Subjt:  FGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARECPNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC

AT4G38680.1 glycine rich protein 22.1e-3446.55Show/hide
Query:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGGRGGR
        ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+         S   R  FGGG GGGRG  
Subjt:  ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGS---------SGNRRDNFGGGGGGGRGGR

Query:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRG
        GGGYG GG G+ G     G  G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G G  Y  GG G+        
Subjt:  GGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGCFNCGEYGHLARECPNESR
        G GG  GGGGGG C++CGE GH AR+C +  R
Subjt:  GAGGGSGGGGGGGCFNCGEYGHLARECPNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTC
GATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATG
GATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGG
CGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGG
TGGGTGTTTCACTTGCGGTGAGGTTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTT
TTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACACTTGGCTAGAGAA
TGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCGAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGA
GTGTCCTGATGCACCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTC
GATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATG
GATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGG
CGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGG
TGGGTGTTTCACTTGCGGTGAGGTTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTT
TTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACACTTGGCTAGAGAA
TGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCGAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGA
GTGTCCTGATGCACCT
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDR
RNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARE
CPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP